HsaEX0006681 @ hg19
Exon Skipping
Gene
ENSG00000198513 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:11231]
Coordinates
chr14:51094749-51099786:+
Coord C1 exon
chr14:51094749-51095180
Coord A exon
chr14:51095284-51095298
Coord C2 exon
chr14:51098947-51099786
Length
15 bp
Sequences
Splice sites
3' ss Seq
ATACAGATCAACAGGAATTGGGC
3' ss Score
-17.13
5' ss Seq
CAAGAATGT
5' ss Score
-0.74
Exon sequences
Seq C1 exon
ATTTGTGGTGGTGACAAACCATTTCTGGCCCCAAATGACTTGCAGACCAAACACCTGCAACTTAAGGAAGAATCTGTGAAGCTATTCCGAGGGGTGAAGAAGATGGGTGGGGAAGAATTTAGCCGGCGTTACCTGCAGCAGTTGGAGAGTGAAATAGATGAACTTTACATCCAATATATCAAGCACAATGATAGCAAAAATATCTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGTAGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTATGCAATATGATAATGGGACTGACCCTTATCACCCTGTGCACTTGGGCATATATCCGGTACTCTGGAGAATACCGAGAGCTGGGAGCTGTAATAGACCAGGTGGCTGCAGCTCTGTGGGACCAG
Seq A exon
GGCCCCAGTCATCAA
Seq C2 exon
GCTTTGTACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTTCCCTACACCAAAGTCGGAATCTACTGAACAATCAGAAAAGAAAAAAATGTAATGCAAATTTTAAGAAATACAGGTGCATGACCAATTGTCAATTAAATATTCAGTTTTATGTCTCCATGCAAACATTCAAAGTGCTTCCATCAGAACGGAGTAAAATACTAAACACCTCTGAAGACTGCAAACTGGATTAGTTCTTTTACTTCAGTGTTTAATAAGCAGATGTATGTATGCATGGTTATACTATTTTGTTAACATGTACAATTTCCTGATTTTTCTTCAAAAATGCTGTTATAAAGTATTTGTCTATTTATGATAACAGTACACGTGTTCTGCTTGAATTTACTAAATTCTACTACTGGGTTATAATTAAATCATGTGATATTCCACGTTTGGATATGCTCATTTAATTTCTACAGAAAAAATTTTAAATTATTTCACATTAGCCATTTGTTAAAACACAGCATCATAACTCAGCAGGCTGGATTTAATCTGTATCATCTTATATATATCACAATCTTATTTTTAAGCACATTTTAGAGTTCCTTAGTTGCTTTATCAAAAACCAGATATTGCTTTTACATGGTTTAATAGAATATAAACCTCTTGATAAAAAATGCACAAAAAATCACTTTGTATATGTGAGTTTCACTGCATTGTATATTTTTTCATTTGGTACACAAAGAATGTATTCTTCATAGGTTTATTCTTTTAATATGTGAACTATTATTAAAGTTTACTCTGGTTCCTAAGATTAAAAACAAATGCTTACTGAATTTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198513-MICROEX1-1/2
Average complexity
MIC_M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.296
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(53.9=47.9),PF096855=Tic20=WD(100=54.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTGGGCATATATCCGGT
R:
TGCTGCTGCACTGTAAAGCTT
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)