GgaEX0018624 @ galGal4
Exon Skipping
Gene
ENSGALG00000012339 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
Coordinates
chr5:57780593-57784079:+
Coord C1 exon
chr5:57780593-57781024
Coord A exon
chr5:57782478-57782492
Coord C2 exon
chr5:57783182-57784079
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCCCCCAATGCCTCTCGCAGGGG
3' ss Score
6.88
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTGTGGTGGGGACAAACCCTTCCTTGCACCCAGTGACCTGCAGACCAAACACGTGGAGCTGAAGGACGAAGCCGTGAGGCTGTTCCGTGGGGTGAAGAAGATGGGCGGGGAGGAGTTCAGCCGCCGCTACCTCCAGCAGCTGGAGAACGAGATCGATGAGCTCTACATCCAGTACATCAAGCACAACGACAGCAAGAACATCTTCCACGCCGCCCGCACCCCCGCCACGCTCTTCGTCGTCATCTTCATCACTTACGTCATCGCCGGAGTGACCGGCTTCATTGGCTTGGACATCATAGCCAGTCTGTGCAACATGATCATGGGCTTGACACTTATCACACTGTGTACCTGGGCGTACATCAGATACTCTGGGGAGTACAGAGAACTGGGCGCAGTAATAGACCAAGTGGCGGCGGCGTTGTGGGACCAG
Seq A exon
GGGAGCACAAATGAG
Seq C2 exon
GCTTTGTACAAGCTGTACAGCGCGGCAGCGACCCACAGACATTTGTACCACCACGCCTTCCCCGCACAGAAAGCGGAGCCTGCCGAGGGCCCGGACAGGAAGAAGATGTGACACAGCTGTGAGCCACGGGCAGCCTCGTCGGTGCATGAACGCGACGCGGCCGCCATCGGTTCAGCCCTTCATTGCTCACCCATCACGAGCTGCCGTGCAGGACCAAACACGGGGCTCAGCGCCCAGCCGGGCTCTGTCCATGCAGCAGTGGCTGGGAAGGCTGGGGCACGTCTTGTGTTCTGTTCTGTGTACATAGCGGTGCTGCTGCCCACACAAAGTGCTTTTGATTTGCAATATCCAGCGTACTTCCCAGCTCGTTTACAAAGCCTTATTTCTCCCTTTTTAATTAATCATTAAGGGAATTATAATTTGCGTGGCACTGCAACTAAAGACCTTCCAAATCTTAGCGTTATTCCAAACCATCTTCTGTCCAGATACTTGAACAGGTTGTAACACGTAACCACGGTTTTTCTTCAATTACAGCAGCGTAATTAGAAATGTATTAACTTGCTCTGTCAGCAGCTGTAAGGACACTTATGCTATGGTATGTTAACGATATTGTAAGGAAAGCGTACTTTTCCATTCGTAACTGATGCCCACGGTCTCACTTTGTACGAGTATCGGAGAAAGTCTCACTGTATTTCTGTATATATATCCGTTATAGTGCATAGGAATGTGTTCTTTTATTGTCAGAACTATTAAAGTTTGCTTTTTGTTCCTAAGAAGTCGGCTCTGGAGGCTGTGCGCTGCTCAGCTACGAACCTTCCGTTCAGCCCTCGACGCGGCAGAGATGAGCTGACCACCCCCTGGTTCATTAAACAAAGTGATTTTTATTGAATTAACAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012339-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(53.5=47.9),PF096855=Tic20=WD(100=55.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGCGCAGTAATAGACCA
R:
GGAAGGCGTGGTGGTACAAAT
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]