Special

BtaEX0004786 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus atlastin GTPase 1 (ATL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034631]
Coordinates
chr10:43562588-43569743:+
Coord C1 exon
chr10:43562588-43563019
Coord A exon
chr10:43567090-43567104
Coord C2 exon
chr10:43568913-43569743
Length
15 bp
Sequences
Splice sites
3' ss Seq
TTAATCTGCCTTTACCACAGGGA
3' ss Score
8.41
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATATGTGGCGGTGACAAACCATTTCTGGCCCCTAATGACCTGCAGACCAAACATCTGGAGCTTAAGGAAGAATCTGTGAAGCTATTTCGAGGGGTAAAGAAGATGGGTGGGGAGGAATTTAGCCGTCGTTACTTGCAACAGTTGGAGACTGAAATAGATGAACTCTACATCCAGTATATCAAGCACAATGATAGCAAAAATATCTTCCATGCAGCTCGTACCCCAGCCACACTGTTTGTTGTCATCTTTATCACATATGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTATGCAATATGATAATGGGACTGACCCTTATCACCCTGTGTACCTGGGCATACATCCGGTACTCTGGAGAATACCGAGAGCTGGGAGCTGTAATAGACCAAGTGGCTGCAGCCTTGTGGGACCAG
Seq A exon
GGAAGTACAAATGAG
Seq C2 exon
GCTTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACATCTGTATCATCAAGCTTTTCCTGCACCAAAGTCAGAATCTACTGAACAATCAGAAAAGAAGAAAATGTAACCCCAAATTTAAAAAATACAGGTGCATGACCAAATTGTCAATTAAATATTGTTTTACGTTTCCATGCAAACATACAAAGTGCTTCCATCAGAACAGAGTAGAATGCCAAGCACCTCTGAAGACTGCACAACAGCTTAGTTCTTTTACTTCAGTGTCTAATAAGCAGATATATGTATGCATGGTTATATCATTTGTTAACATGTATAGTTTCTTGATTTTGTCTTCAAATATGCTATTATAATTTAAAGAATTTGTCTATTTATGATAATGGTACATGTGTTCTGCTTGAATTTACTAAATACTACTACTGGGTTATAGTTAAACCATGTAGTAATATTACTCCACATTTGGATATGCTCATTTAATTTCTACAGAAGAATTTTTAAATTATTTCACATAGGCATTTGTTAAAACATAGCTCAATAGGCTTGATTCAACCTATACCATCTTACATATACCATTAGCTTTTATTATAAAAGACATCTAAGAGAGCTTTTCAGTTGCTTTATCAGAAACTATATATTGCTTCTTTTATATTATTGTTTAATATAGAATATAAACCTCTTGATCAAAAATGCACAAAAAAATCACTTTGTATATGTATTTGAGTTTCACTGCATTGTATATTTTTTCATTTGGTACACAAAGATATGTATTCATCATAGGTTTATTCTTTTAACATGTGAACTATTATTAAAGTTTATTCTGGTTCCTAAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014312-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.278
Domain overlap (PFAM):

C1:
PF028419=GBP_C=PD(53.9=47.9)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCATACATCCGGTACT
R:
TGCTGCTGCACTGTAAAGCTT
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development