GgaEX0018624 @ galGal3
Exon Skipping
Gene
ENSGALG00000012339 | ATL1
Description
NA
Coordinates
chr5:60464531-60467892:+
Coord C1 exon
chr5:60464531-60464962
Coord A exon
chr5:60466416-60466430
Coord C2 exon
chr5:60467120-60467892
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCCCCCAATGCCTCTCGCAGGGG
3' ss Score
6.88
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTCTGTGGTGGGGACAAACCCTTCCTTGCACCCAGTGACCTGCAGACCAAACACGTGGAGCTGAAGGACGAAGCCGTGAGGCTGTTCCGTGGGGTGAAGAAGATGGGCGGGGAGGAGTTCAGCCGCCGCTACCTCCAGCAGCTGGAGAACGAGATCGATGAGCTCTACATCCAGTACATCAAGCACAACGACAGCAAGAACATCTTCCACGCCGCCCGCACCCCCGCCACGCTCTTCGTCGTCATCTTCATCACTTACGTCATCGCCGGAGTGACCGGCTTCATTGGCTTGGACATCATAGCCAGTCTGTGCAACATGATCATGGGCTTGACACTTATCACACTGTGTACCTGGGCGTACATCAGATACTCTGGGGAGTACAGAGAACTGGGCGCAGTAATAGACCAAGTGGCGGCGGCGTTGTGGGACCAG
Seq A exon
GGGAGCACAAATGAG
Seq C2 exon
GCTTTGTACAAGCTGTACAGCGCGGCAGCGACCCACAGACATTTGTACCACCACGCCTTCCCCGCACAGAAAGCGGAGCCTGCCGAGGGCCCGGACAGGAAGAAGATGTGACACAGCTGTGAGCCACGGGCAGCCTCGTCGGTGCATGAACGCGACGCGGCCGCCATCGGTTCAGCCCTTCATTGCTCACCCATCACGAGCTGCCGTGCAGGACCAAACACGGGGCTCAGCGCCCAGCCGGGCTCTGTCCATGCAGCAGTGGCTGGGAAGGCTGGGGCACGTCTTGTGTTCTGTTCTGTGTACATAGCGGTGCTGCTGCCCACACAAAGTGCTTTTGATTTGCAATATCCAGCGTACTTCCCAGCTCGTTTACAAAGCCTTATTTCTCCCTTTTTAATTAATCATTAAGGGAATTATAATTTGCGTGGCACTGCAACTAAAGACCTTCCAAATCTTAGCGTTATTCCAAACCATCTTCTGTCCAGATACTTGAACAGGTTGTAACACGTAACCACGGTTTTTCTTCAATTACAGCAGCGTAATTAGAAATGTATTAACTTGCTCTGTCAGCAGCTGTAAGGACACTTATGCTATGGTATGTTAACGATATTGTAAGGAAAGCGTACTTTTCCATTCGTAACTGATGCCCACGGTCTCACTTTGTACGAGTATCGGAGAAAGTCTCACTGTATTTCTGTATATATATCCGTTATAGTGCATAGGAATGTGTTCTTTTATTGTCAGAACTATTAAAGTTTGCTTTTTGTTCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012339-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(53.5=47.9),PF096855=Tic20=WD(100=55.6)
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGCGCAGTAATAGACCA
R:
GGAAGGCGTGGTGGTACAAAT
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]