RnoEX0012769 @ rn6
Exon Skipping
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92365246-92370421:+
Coord C1 exon
chr6:92365246-92365677
Coord A exon
chr6:92366752-92366766
Coord C2 exon
chr6:92369627-92370421
Length
15 bp
Sequences
Splice sites
3' ss Seq
TAAAATTGCCTTTGCTACAGGGA
3' ss Score
6.39
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
ATTTGTGGTGGTGACAAACCATTCTTGGCCCCCAATGACCTGCAAACCAAGCACCTGCAGCTAAAAGAAGACTCTGTGAAGCTGTTCCGAGGTGTGAAGAAGATGGGTGGGGAAGAATTCAGCCGGCGCTACCTACAGCAGCTGGAGAGTGAAATAGACGAACTCTACATCCAGTACATCAAGCACAATGACAGCAAAAATATCTTCCATGCCGCTCGCACCCCAGCCACACTGTTTGTTGTCATCTTTATCACGTATGTCATCGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACACTCATCACGCTGTGCACCTGGGCATACATCCGCTACTCTGGGGAGTATCGAGAGCTGGGCGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
Seq A exon
GGAAGCACAAATGAG
Seq C2 exon
GCTTTATACAAGCTGTACAGTGCAGCAGCAACCCACAGACACCTGTATCAGCAAGCCTTTCCTGCACCCAAGTCAGAACCTACTGAGCAACCGGAAAAGAAGAAAATTTAATTTAAAAAGTGCAGGTGCATGACCATTTGTCAGCTGTCAAAGCTTTTGTCTCCATGCAAACATGCAAAGTGCTTCCTTCAGACAGAGTGAGACCCCAACACCCAAGGACTCGAACACTTTACTGCTTTACTCCAGTGTTTAATGAGCAGATGTATGTATGCATGGTTGGTTGTTAACACGCAGGTTCTTGATTTCTGTCTTTAAACATGCTATTATCATTTTAGGTATTTGTAAATTTGAGGGCAGTAGATTTGTTCTGCTTGACTTTTCTAAGTTCTACTACTGGGTTATAATTAAATATTGTGTGATATTACTCTGGGTTTGGATATGCTCCTTTAATTTCTATAGGAAATTTAAGTTATTTTACCTAGTTATTTGTTGAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063-'22-22,'22-20,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF028419=GBP_C=PD(53.9=47.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTAATCGACCAGGTAGC
R:
CTGACTTGGGTGCAGGAAAGG
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]