Special

MmuEX0006695 @ mm10

Exon Skipping

Gene
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:69959041-69964085:+
Coord C1 exon
chr12:69959041-69959472
Coord A exon
chr12:69960548-69960562
Coord C2 exon
chr12:69963228-69964085
Length
15 bp
Sequences
Splice sites
3' ss Seq
TAAAATTCCCTTTGCTACAGGGA
3' ss Score
7.47
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GTTTGTGGTGGTGATAAACCATTTTTGGCCCCTAACGACCTGCAAAGCAAGCACCTGCAGCTAAAAGAAGAATCTGTGAAGTTATTCCGAGGCGTGAAGAAGATGGGCGGGGAAGAGTTCAGCCGGCGTTACCTGCAGCAGCTGGAGAGTGAAATAGATGAACTCTACATCCAGTATATTAAGCACAATGACAGCAAAAATATCTTCCATGCTGCTCGAACCCCAGCCACACTGTTCGTTGTCATCTTTATCACATACGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACGCTTATCACCCTCTGCACCTGGGCATATATCCGCTACTCTGGCGAATATCGAGAGCTGGGTGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
Seq A exon
GGAAGCACAAATGAG
Seq C2 exon
GCGTTATACAAGCTTTACAGTGCAGCAGCAACCCACAGACACCTGTGTCACCAAGCTTTCCCTGCACCCAAGTCAGAGCCTACTCAACAACCGGAAAAGAAGAAAATTTAATCTAAAAACATGCAGGTGCATGACCGTTTGTCAGCTAACTATCAAAGCTTTTGTTTCCATGCAAACATGCAAAGTGCTTCCTTTAGAGTGAAACCCAAACACCCGACCGAGGACTCGGACAGTTTACTTCTTTACTCCAGTGTTTAATGAGCAGATGTATGTATGCATGGTTATTTGTCAATGTGCAGTTTCCTCATTTCTGTCTTTAAATATGCTATTATCATTTCAGGTATTTGTAAATTTGAGGATAGATTTGTTCTGCTTGACTTTTCTAAGTTCTACTACTGGGTTATAATTAAATATTGTGTAGTATTACTCTGGGTTTGGATATGCTCATTTGATTTCTATAGAAAATTTAAGTTATTTTACATAGCTATTTGTTAAAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'31-23,'31-22,33-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.306
Domain overlap (PFAM):

C1:
PF028419=GBP_C=PD(53.9=47.9)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCTGGGCATATATCCG
R:
TGCTGCTGCACTGTAAAGCTT
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types