GgaEX0018623 @ galGal4
Exon Skipping
Gene
ENSGALG00000012339 | ATL1
Description
atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
Coordinates
chr5:57778386-57784079:+
Coord C1 exon
chr5:57778386-57778442
Coord A exon
chr5:57779209-57779280
Coord C2 exon
chr5:57783182-57784079
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCCCTTCTTGCAGGCC
3' ss Score
11.2
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCATACATCAAGATCTACCAGGGGGAAGAGCTGCCGCACCCAAAGTCGATGCTGCAG
Seq A exon
GCCACGGCAGAAGCCAACAATTTAGCAGCAGTTGCCACTGCCAAAGACACCTACAGCAGGAGAATGGAAGAG
Seq C2 exon
GCTTTGTACAAGCTGTACAGCGCGGCAGCGACCCACAGACATTTGTACCACCACGCCTTCCCCGCACAGAAAGCGGAGCCTGCCGAGGGCCCGGACAGGAAGAAGATGTGACACAGCTGTGAGCCACGGGCAGCCTCGTCGGTGCATGAACGCGACGCGGCCGCCATCGGTTCAGCCCTTCATTGCTCACCCATCACGAGCTGCCGTGCAGGACCAAACACGGGGCTCAGCGCCCAGCCGGGCTCTGTCCATGCAGCAGTGGCTGGGAAGGCTGGGGCACGTCTTGTGTTCTGTTCTGTGTACATAGCGGTGCTGCTGCCCACACAAAGTGCTTTTGATTTGCAATATCCAGCGTACTTCCCAGCTCGTTTACAAAGCCTTATTTCTCCCTTTTTAATTAATCATTAAGGGAATTATAATTTGCGTGGCACTGCAACTAAAGACCTTCCAAATCTTAGCGTTATTCCAAACCATCTTCTGTCCAGATACTTGAACAGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012339_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.194
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.0=100)
A:
PF028419=GBP_C=FE(17.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCAGGGGGAAGAGCTG
R:
GCTCACAGCTGTGTCACATCT
Band lengths:
169-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]