GgaEX0018623 @ galGal3
Exon Skipping
Gene
ENSGALG00000012339 | ATL1
Description
NA
Coordinates
chr5:60461902-60464962:+
Coord C1 exon
chr5:60461902-60461958
Coord A exon
chr5:60462725-60462796
Coord C2 exon
chr5:60464531-60464962
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGCCCTTCTTGCAGGCC
3' ss Score
11.2
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCATACATCAAGATCTACCAGGGGGAAGAGCTGCCGCACCCAAAGTCGATGCTGCAG
Seq A exon
GCCACGGCAGAAGCCAACAATTTAGCAGCAGTTGCCACTGCCAAAGACACCTACAGCAGGAGAATGGAAGAG
Seq C2 exon
GTCTGTGGTGGGGACAAACCCTTCCTTGCACCCAGTGACCTGCAGACCAAACACGTGGAGCTGAAGGACGAAGCCGTGAGGCTGTTCCGTGGGGTGAAGAAGATGGGCGGGGAGGAGTTCAGCCGCCGCTACCTCCAGCAGCTGGAGAACGAGATCGATGAGCTCTACATCCAGTACATCAAGCACAACGACAGCAAGAACATCTTCCACGCCGCCCGCACCCCCGCCACGCTCTTCGTCGTCATCTTCATCACTTACGTCATCGCCGGAGTGACCGGCTTCATTGGCTTGGACATCATAGCCAGTCTGTGCAACATGATCATGGGCTTGACACTTATCACACTGTGTACCTGGGCGTACATCAGATACTCTGGGGAGTACAGAGAACTGGGCGCAGTAATAGACCAAGTGGCGGCGGCGTTGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012339-'14-11,'14-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.0=100)
A:
PF028419=GBP_C=FE(17.8=100)
C2:
PF028419=GBP_C=PD(53.5=47.9),PF096855=Tic20=WD(100=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGTCGATGCTGCAG
R:
GATCTCGTTCTCCAGCTGCTG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]