DreEX6062624 @ danRer10
Exon Skipping
Gene
ENSDARG00000060481 | atl1
Description
atlastin GTPase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8003]
Coordinates
chr13:36653212-36655635:+
Coord C1 exon
chr13:36653212-36653268
Coord A exon
chr13:36653370-36653441
Coord C2 exon
chr13:36655204-36655635
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTTGTGTTCACAGGCC
3' ss Score
10.56
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCGTATATCAAGATTTACCAGGGAGAGGAGCTGCCACATCCAAAATCCATGTTACAG
Seq A exon
GCCACAGCAGAGGCCAATAATCTGGCAGCAGTGGCTGGAGCTAAAGATCTGTACAACAGGAAGATGGAGGTG
Seq C2 exon
GTGAGTGGAGGAGATCGTCCTTTCCTCGCCCCGAGTGAACTTCAGGCACGTCACCTGGAGATCCGCGAGGAGGCGTTAGCATTATTCCGCAGTGTGAAGAAGATGGGTGGCGAGGAGTTCAGCCGGCGTTACCTGCTGCAGCTGGAGACCGAGATCGATGAGCTGTTCGTTCAGTACATCAAACACAACGACTCCAAGAACATCTTTCACGCGGCTCGGACACCCGCCACGCTCTTTGTGGTGATCTTCGTGATGTACGTGGCCGCAGGAATCACAGGCTTCGTGGGAGTGGATGTCATCGCCAGCGTCTGCAACATGGTGCTGGGGTTTGCGCTCATCACTCTGTGCACCTGGGCTTATATTCGCTACTCAGGAGAATACAGAGAACTGGGCGCGGTCATCGACCAGGTGGCAGGAGCTCTGTGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060481-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.1=100)
A:
PF028419=GBP_C=FE(18.0=100)
C2:
PF028419=GBP_C=PD(53.9=47.9),PF096855=Tic20=WD(100=54.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGCCACATCCAAAA
R:
CTCCAGCTGCAGCAGGTAAC
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]