MmuEX0006694 @ mm10
Exon Skipping
Gene
ENSMUSG00000021066 | Atl1
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:69954456-69959472:+
Coord C1 exon
chr12:69954456-69954512
Coord A exon
chr12:69955316-69955387
Coord C2 exon
chr12:69959041-69959472
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAGCGTCTGCTCTATCCCAGGCC
3' ss Score
6.07
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCATACATAAAGATATACCAAGGTGAAGAATTGCCGCATCCCAAGTCCATGTTACAG
Seq A exon
GCCACAGCAGAAGCTAACAATTTAGCAGCTGTTGCAACTGCCAAGGACACATACAACAAGAAGATGGAAGAG
Seq C2 exon
GTTTGTGGTGGTGATAAACCATTTTTGGCCCCTAACGACCTGCAAAGCAAGCACCTGCAGCTAAAAGAAGAATCTGTGAAGTTATTCCGAGGCGTGAAGAAGATGGGCGGGGAAGAGTTCAGCCGGCGTTACCTGCAGCAGCTGGAGAGTGAAATAGATGAACTCTACATCCAGTATATTAAGCACAATGACAGCAAAAATATCTTCCATGCTGCTCGAACCCCAGCCACACTGTTCGTTGTCATCTTTATCACATACGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACGCTTATCACCCTCTGCACCTGGGCATATATCCGCTACTCTGGCGAATATCGAGAGCTGGGTGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'27-21,'27-18,28-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.1=100)
A:
PF028419=GBP_C=FE(18.0=100)
C2:
PF028419=GBP_C=PD(53.9=47.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATCCCAAGTCCATGTTA
R:
ATTTCACTCTCCAGCTGCTGC
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types