RnoEX0012768 @ rn6
Exon Skipping
Gene
ENSRNOG00000005063 | Atl1
Description
atlastin GTPase 1 [Source:RGD Symbol;Acc:1359232]
Coordinates
chr6:92362275-92365677:+
Coord C1 exon
chr6:92362275-92362331
Coord A exon
chr6:92362808-92362879
Coord C2 exon
chr6:92365246-92365677
Length
72 bp
Sequences
Splice sites
3' ss Seq
AACGTGTACTTTGTCCCAAGGCC
3' ss Score
6.8
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCGTACATAAAGATCTACCAAGGGGAAGAATTGCCACATCCCAAGTCCATGTTACAG
Seq A exon
GCCACAGCAGAAGCCAACAACCTAGCAGCTGTTGCAACCGCCAAGGACACATACAACAAGAAGATGGAGGAG
Seq C2 exon
ATTTGTGGTGGTGACAAACCATTCTTGGCCCCCAATGACCTGCAAACCAAGCACCTGCAGCTAAAAGAAGACTCTGTGAAGCTGTTCCGAGGTGTGAAGAAGATGGGTGGGGAAGAATTCAGCCGGCGCTACCTACAGCAGCTGGAGAGTGAAATAGACGAACTCTACATCCAGTACATCAAGCACAATGACAGCAAAAATATCTTCCATGCCGCTCGCACCCCAGCCACACTGTTTGTTGTCATCTTTATCACGTATGTCATCGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACACTCATCACGCTGTGCACCTGGGCATACATCCGCTACTCTGGGGAGTATCGAGAGCTGGGCGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005063-'19-19,'19-18,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.1=100)
A:
PF028419=GBP_C=FE(18.0=100)
C2:
PF028419=GBP_C=PD(53.9=47.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACATCCCAAGTCCATGTT
R:
TCACTCTCCAGCTGCTGTAGG
Band lengths:
177-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]