MmuEX0006694 @ mm9
Exon Skipping
Gene
ENSMUSG00000021066 | Atl1
Description
atlastin GTPase 1 [Source:MGI Symbol;Acc:MGI:1921241]
Coordinates
chr12:71055443-71060459:+
Coord C1 exon
chr12:71055443-71055499
Coord A exon
chr12:71056303-71056374
Coord C2 exon
chr12:71060028-71060459
Length
72 bp
Sequences
Splice sites
3' ss Seq
AAGCGTCTGCTCTATCCCAGGCC
3' ss Score
6.07
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GCATACATAAAGATATACCAAGGTGAAGAATTGCCGCATCCCAAGTCCATGTTACAG
Seq A exon
GCCACAGCAGAAGCTAACAATTTAGCAGCTGTTGCAACTGCCAAGGACACATACAACAAGAAGATGGAAGAG
Seq C2 exon
GTTTGTGGTGGTGATAAACCATTTTTGGCCCCTAACGACCTGCAAAGCAAGCACCTGCAGCTAAAAGAAGAATCTGTGAAGTTATTCCGAGGCGTGAAGAAGATGGGCGGGGAAGAGTTCAGCCGGCGTTACCTGCAGCAGCTGGAGAGTGAAATAGATGAACTCTACATCCAGTATATTAAGCACAATGACAGCAAAAATATCTTCCATGCTGCTCGAACCCCAGCCACACTGTTCGTTGTCATCTTTATCACATACGTGATTGCTGGTGTGACTGGATTCATTGGTTTGGACATCATAGCTAGCCTGTGCAACATGATCATGGGACTGACGCTTATCACCCTCTGCACCTGGGCATATATCCGCTACTCTGGCGAATATCGAGAGCTGGGTGCTGTAATCGACCAGGTAGCTGCAGCTTTGTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021066-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF028419=GBP_C=FE(14.1=100)
A:
PF028419=GBP_C=FE(18.0=100)
C2:
PF028419=GBP_C=PD(53.9=47.9),PF096855=Tic20=WD(100=54.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCATCCCAAGTCCATGTTA
R:
ATTTCACTCTCCAGCTGCTGC
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: