HsaEX0006684 @ hg19
Exon Skipping
Gene
ENSG00000119787 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:24047]
Coordinates
chr2:38570410-38604404:-
Coord C1 exon
chr2:38604285-38604404
Coord A exon
chr2:38581209-38581319
Coord C2 exon
chr2:38570410-38570654
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTTTTTTGAGACAGAGT
3' ss Score
2.17
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
AGATGGCGGAGGGGGACGAGGCAGCGCGAGGGCAGCAACCGCACCAGGGGCTGTGGCGCCGGCGACGGACCAGCGACCCAAGCGCCGCGGTTAACCACGTCTCGTCCACGACCTCCCTAG
Seq A exon
AGTCTTGCTCTGTCGCCAGGTTGGAGTGCAGTGGCACGATCTTCGCTTACTGCAACCTCCCGGGTTCAAGTGATTCCTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAG
Seq C2 exon
GTGAGAATTATGAAGATGATGACCTAGTAAATTCTGATGAGGTTATGAAGAAACCATGTCCAGTACAGATTGTTCTTGCTCATGAAGATGACCATAACTTTGAACTTGATGAAGAAGCTTTGGAGCAGATATTGCTACAGGAGCACATACGAGATCTTAACATAGTAGTGGTATCTGTGGCAGGAGCTTTTCGTAAAGGGAAGTCATTTCTACTGGACTTCATGCTTAGATACATGTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119787-'0-5,'0-4,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.828 A=0.105 C2=0.093
Domain overlap (PFAM):
C1:
PF117293=Capsid-VNN=PU(56.5=92.1)
A:
NO
C2:
PF117293=Capsid-VNN=PD(40.3=30.5),PF0226314=GBP=WD(100=63.4),PF0226314=GBP=PU(2.8=4.9)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGACCAGCGACCCAAG
R:
CGAAAAGCTCCTGCCACAGAT
Band lengths:
250-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)