HsaEX0006698 @ hg19
Exon Skipping
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:24526]
Coordinates
chr11:63426510-63439187:-
Coord C1 exon
chr11:63439108-63439187
Coord A exon
chr11:63438762-63438883
Coord C2 exon
chr11:63426510-63426724
Length
122 bp
Sequences
Splice sites
3' ss Seq
CGCCCGTTTCCCGCTTCCAGGGC
3' ss Score
11.39
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ATGAGGACCGCTGGCCGGGACCCAGTGAGCGCGGGACTACAATTCCCAAAGGACGGTAGCACTCAGCGCCCCGCCAACAG
Seq A exon
GGCCCGGTTCGTTCCCGCCCGCACCCGTCCCTCTCCTCTGCACCCCTGCTGCTTCTGCTTTGAAGGCGGAGGCTCCATGTTGTCCCCTCAGCGAGTGGCAGCAGCTGCCTCAAGAGGAGCAG
Seq C2 exon
ATGATGCCATGGAGAGCAGCAAGCCTGGTCCAGTGCAGGTTGTTTTGGTTCAGAAAGATCAACATTCCTTTGAGCTAGATGAGAAAGCCTTGGCCAGCATCCTCTTGCAGGACCACATCCGAGATCTTGATGTGGTGGTGGTTTCAGTGGCTGGTGCCTTCCGAAAGGGCAAGTCCTTCATTCTGGATTTTATGCTACGATACTTATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.355 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0226314=GBP=PU(18.5=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCGCGGGACTACAATTC
R:
TCCAGAATGAAGGACTTGCCC
Band lengths:
243-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)