MmuEX0006706 @ mm9
Exon Skipping
Gene
ENSMUSG00000024759 | Atl3
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7568530-7584052:+
Coord C1 exon
chr19:7568530-7568851
Coord A exon
chr19:7569044-7569151
Coord C2 exon
chr19:7583838-7584052
Length
108 bp
Sequences
Splice sites
3' ss Seq
CGCCTGTTTCCCTCCTCCAGGGC
3' ss Score
11.95
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGTCCTGGCCAGCGAGGAACACCAGAGCCCAGCACGCGGGCCGGGTGGGGGCTCCCGGCGGGAACCGGGTGGCCAAAGCCCGGCCCTGGTCCCCGGGTTAGGCGCCGGGCAGGGTCTTCCGAGAGCCCTCCTCATTTTTTTCCCTTTGCAAGGCCTAATGGGAGTTGTAGTTCAGCGGTAGGAAGACCCACTCGGCCCAGTCCTGTCCTCCGTTTCCTCTACGCCCCGGATGAGGGCGAACACCCGGGTCAGAGGGGCCGGGCCCAAGAAAACGCCGAACTACAATTCCCGATGGACCCGACATTCCAGTACGCAGTCACAG
Seq A exon
GGCAGCCTCAACCCGCTCCTGTCTTCTCTGCCTCTGCTACTTCTGCTGAAGGAGGAGGCTCCATGTTGTCCCCTCAGCGAACTGCAGCGGTGGCATCGAGAGGAGCAG
Seq C2 exon
GTGATGCCATGGAAAATGGAAAACCTGGTCCAGTGCAGGTTGTTTTGGTTCATAAAGAACAACATTCCTTTGAGCTAGAAGAGAGAGCCTTGGCCAGCGTCCTCCTCCAAGACCATATCCGAGATCTTGATGTGGTGGTAGTATCAGTGGCTGGTGCTTTTCGAAAGGGTAAATCCTTCATTCTGGACTTTATGCTGCGATACTTATATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.318 A=0.693 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0226314=GBP=PU(18.5=70.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGAGCCCTCCTCATTTT
R:
AAACAACCTGCACTGGACCAG
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types