HsaEX0007727 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160261533-160269056:-
Coord C1 exon
chr2:160268846-160269056
Coord A exon
chr2:160268418-160268506
Coord C2 exon
chr2:160261533-160261625
Length
89 bp
Sequences
Splice sites
3' ss Seq
GGAAATTCTCATTTTAACAGCTC
3' ss Score
5.2
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAACGAGCAAGAGAGGAATCCAGGATGAGACGTCGGAAAGGTCGACCTCCAAATGTTGGCAATGCTGAATTCCTAGATAACGCAGATGCAAAGTTGCTAAGAAAACTGCAAGCTCAAG
Seq A exon
CTCCCGATTCCTTGAGGTGGTACATGGGAATAACTCCAAAATATGTGGATCTGTGGAGTAAATTTTCAGTCAGAGAACTCCAATTACTG
Seq C2 exon
AAATAGCCAGGCAAGCAGCACAAATAAAGCTTTTGAGAAAACTTCAAAAGCAGGAACAGGCTCGGGTTGCTAAAGAAGCCAAAAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'27-28,'27-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.562 A=0.000 C2=0.405
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(3.8=2.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAGACGTCGGAAAGGT
R:
CTTTAGCAACCCGAGCCTGTT
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)