HsaEX0007727 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159405022-159412545:-
Coord C1 exon
chr2:159412335-159412545
Coord A exon
chr2:159411907-159411995
Coord C2 exon
chr2:159405022-159405114
Length
89 bp
Sequences
Splice sites
3' ss Seq
GGAAATTCTCATTTTAACAGCTC
3' ss Score
5.2
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAATGCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAACGAGCAAGAGAGGAATCCAGGATGAGACGTCGGAAAGGTCGACCTCCAAATGTTGGCAATGCTGAATTCCTAGATAACGCAGATGCAAAGTTGCTAAGAAAACTGCAAGCTCAAG
Seq A exon
CTCCCGATTCCTTGAGGTGGTACATGGGAATAACTCCAAAATATGTGGATCTGTGGAGTAAATTTTCAGTCAGAGAACTCCAATTACTG
Seq C2 exon
AAATAGCCAGGCAAGCAGCACAAATAAAGCTTTTGAGAAAACTTCAAAAGCAGGAACAGGCTCGGGTTGCTAAAGAAGCCAAAAAACAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.558 A=0.000 C2=0.403
Domain overlap (PFAM):
C1:
PF0142914=MBD=PD(3.8=2.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000392783fB771
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGAGACGTCGGAAAGGT
R:
CTTTAGCAACCCGAGCCTGTT
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development