HsaEX0011077 @ hg19
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123808469-123837132:-
Coord C1 exon
chr9:123837032-123837132
Coord A exon
chr9:123820172-123820275
Coord C2 exon
chr9:123808469-123808661
Length
104 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTCTTAATTGCTAGACT
3' ss Score
5.11
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
TGCAGCCAGCGCGCTAGGATGCCGGGGAGTCTTGGGCGCGAGGCTTCCGGCCGCGCGGGGCCGACGGGATGCGGTGCCTTCGCCTTCGGATTGCGTTGCAG
Seq A exon
ACTGATTACTGAGAAGCGAGAAGAATGCTTCAAACAACACCGGATTTAAAGTCTGAGAAGGATATTTTGGAGCAAAGAACTTCTACAACTTATGAGATAAAGAA
Seq C2 exon
ATATGTCATTTCAGCACCAAAAATATTCCGTGTTGGAGCATCTGAAAATATTGTGATTCAAGTTTATGGATACACTGAAGCATTTGATGCAACAATCTCTATTAAAAGTTATCCTGATAAAAAATTTAGTTACTCCTCAGGCCATGTTCATTTATCCTCAGAGAATAAATTCCAAAACTCTGCAATCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGGATGCCGGGGAGTCTTG
R:
TAAATGAACATGGCCTGAGGAGT
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)