HsaEX0011077 @ hg38
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:121046191-121075207:-
Coord C1 exon
chr9:121074754-121075207
Coord A exon
chr9:121057894-121057997
Coord C2 exon
chr9:121046191-121046383
Length
104 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTCTTAATTGCTAGACT
3' ss Score
5.11
5' ss Seq
GAAGTAGGT
5' ss Score
6.22
Exon sequences
Seq C1 exon
TCCCAGACACGCGCCCCCGCCCCGAATCCATCCCAAGCCGGCCCACACCACGCCCGGTCCGGGCCTTCCCGCCTTTGCCGCCGGCCCCCACTGCTCGGGCCGGATGCCGGGGAACGGGCTCGGCCAGGTCTGACGCTCACCGCCTAGAAGCCGAGCCGAGCAGTCCCGCAGGCTGAGGTAGAGCGGGAGAAGTTCGGGCTCTTTCCTCAGGGGCCCAGCGGCGCGGCAGCCATTTTGTTGTGTTGTGCCGGTTGCCGAGGGGCCGCGCGCGCGTGGTCGGGGCTAGTCTCAGCCACGCCCCTCTCCCTCTCCGGTACTGTTGGAAGGGACGCGGAGGCGTTTCCCGCCTCTTTTGCAGCCAGCGCGCTAGGATGCCGGGGAGTCTTGGGCGCGAGGCTTCCGGCCGCGCGGGGCCGACGGGATGCGGTGCCTTCGCCTTCGGATTGCGTTGCAG
Seq A exon
ACTGATTACTGAGAAGCGAGAAGAATGCTTCAAACAACACCGGATTTAAAGTCTGAGAAGGATATTTTGGAGCAAAGAACTTCTACAACTTATGAGATAAAGAA
Seq C2 exon
ATATGTCATTTCAGCACCAAAAATATTCCGTGTTGGAGCATCTGAAAATATTGTGATTCAAGTTTATGGATACACTGAAGCATTTGATGCAACAATCTCTATTAAAAGTTATCCTGATAAAAAATTTAGTTACTCCTCAGGCCATGTTCATTTATCCTCAGAGAATAAATTCCAAAACTCTGCAATCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTTGTGTTGTGCCGGTTG
R:
CCAACACGGAATATTTTTGGTGCT
Band lengths:
257-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development