HsaEX0011099 @ hg19
Exon Skipping
Gene
ENSG00000170085 | C5orf25
Description
chromosome 5 open reading frame 25 [Source:HGNC Symbol;Acc:24779]
Coordinates
chr5:175665365-175717958:+
Coord C1 exon
chr5:175665365-175665640
Coord A exon
chr5:175697394-175697523
Coord C2 exon
chr5:175716657-175717958
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTGAAATTCTTTCTTTTAAGTTC
3' ss Score
6.64
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGGGGCTCGGGGCGGGGCCGGCGTGGCGGTGGCCCGGGTTGTAGCCGCCGCCGCTGCCGCCGCCCCGCCGCCGCCACCTCAGAAGCAGGAACCGAAGTCGTCGCCGCCGCCGCCACTGCCTGGGTCTTCGGTCGGGGCCCGCAGCCATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGTCGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTG
Seq A exon
TTCAAGAACAAGCAGGGAAGGCAGAGCAAGATGGCTGAATAGAACCCTCCAGCATTTGTCCCCCAAGCAAGAACACCAACTTGAACAACTATCCACACAAGAAAGCACTTTCAGAAGAACTAAAACTCAG
Seq C2 exon
GACTTCATTGACTTAACTAGAGAGACCAGACCAAGGACAAAAGATCGCAGTGGACTGTATGTGATTGACCTGACAAGAGCTGAGGGAGAAAATAGACCTATTGCCACTCTTGACTTAACTTTAGAACCTGTCACTCCTTCCCAGAAGGAGCCAACCAGTCTTCAGACATGTGCCAGCCTCTCTGGCAAAGCGGTGATGGAAGGGCACGTGGACAGAAGCTCTCAGCCTACAGCACGGAGAATCATTAACAGTGATCCTGTAGATTTGGACCTAGTGGAAGAAAACACCTTTGTAGGTCCCCCACCCGCTACATCCATCAGTGGAGGCTCTGTTTATCCAACAGAGCCTAATTGTAGCTCAGCCACATTCACAGGTAACCTCAGCTTCTTGGCAAGTCTACAGCTGTCTTCAGATGTTAGCTCCCTCTCCCCAACAAGCAATAATAGTAGGAGCAGCAGCAGCAGCAGCAATCAAAAAGCACCCTTGCCATGCCCACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085-'0-7,'0-6,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.866 A=1.000 C2=0.836
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGGAACCGAAGTCGTC
R:
GTCCACTGCGATCTTTTGTCCT
Band lengths:
249-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)