HsaEX0011098 @ hg19
Exon Skipping
Gene
ENSG00000170085 | C5orf25
Description
chromosome 5 open reading frame 25 [Source:HGNC Symbol;Acc:24779]
Coordinates
chr5:175665365-175722265:+
Coord C1 exon
chr5:175665365-175665640
Coord A exon
chr5:175716657-175717958
Coord C2 exon
chr5:175722033-175722265
Length
1302 bp
Sequences
Splice sites
3' ss Seq
TTCACACAATCCTTCAACAGGAC
3' ss Score
8.38
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCGGGGCTCGGGGCGGGGCCGGCGTGGCGGTGGCCCGGGTTGTAGCCGCCGCCGCTGCCGCCGCCCCGCCGCCGCCACCTCAGAAGCAGGAACCGAAGTCGTCGCCGCCGCCGCCACTGCCTGGGTCTTCGGTCGGGGCCCGCAGCCATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGTCGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTG
Seq A exon
GACTTCATTGACTTAACTAGAGAGACCAGACCAAGGACAAAAGATCGCAGTGGACTGTATGTGATTGACCTGACAAGAGCTGAGGGAGAAAATAGACCTATTGCCACTCTTGACTTAACTTTAGAACCTGTCACTCCTTCCCAGAAGGAGCCAACCAGTCTTCAGACATGTGCCAGCCTCTCTGGCAAAGCGGTGATGGAAGGGCACGTGGACAGAAGCTCTCAGCCTACAGCACGGAGAATCATTAACAGTGATCCTGTAGATTTGGACCTAGTGGAAGAAAACACCTTTGTAGGTCCCCCACCCGCTACATCCATCAGTGGAGGCTCTGTTTATCCAACAGAGCCTAATTGTAGCTCAGCCACATTCACAGGTAACCTCAGCTTCTTGGCAAGTCTACAGCTGTCTTCAGATGTTAGCTCCCTCTCCCCAACAAGCAATAATAGTAGGAGCAGCAGCAGCAGCAGCAATCAAAAAGCACCCTTGCCATGCCCACAGCAAGATGTATCTCGCCCACCACAGGCCTTGCCGTGCCCCCTGCGACCTTTGCCATGCCCACCGAGAGCCTCACCATGTCCACCACGAGCCTCCTCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCATGCAGTGCCAACTACCAGCTCTAACTCACCCACCTCAAGAAGTGCCATGCCCTCGGCAGAATATCCCAGGCCCACCTCAAGACTCTCTGGGCCTACCTCAAGATGTGCCAGGGCTGCCTCAAAGCATATTACATCCACAAGATGTGGCATACCTGCAAGACATGCCACGGTCACCAGGAGATGTGCCACAGTCACCAAGTGATGTTTCACCGTCACCAGATGCACCACAGTCACCAGGGGGCATGCCACACTTACCGGGAGATGTGTTACATTCACCTGGAGACATGCCACACTCATCAGGGGACGTGACACACTCACCTAGAGACATCCCTCACTTACCAGGAGACAGGCCTGACTTTACCCAGAATGATGTACAGAACCGTGACATGCCTATGGATATCTCAGCTCTGTCCTCTCCAAGCTGCTCTCCCAGCCCACAGTCTGAAACTCCCTTAGAGAAAGTTCCTTGGCTCTCTGTCATGGAAACCCCAGCCAGAAAAGAAATATCACTGTCAGAGCCTGCCAAACCTGGGTCTGCCCACGTACAATCACGAACACCACAAGGTGGGTTGTACAACAGACCATGCCTGCATAGACTGAAGTACTTCTTACGTCCTCCGGTTCATCACCTCTTCTTTCAGACGCTAATACCGGATAAAGACACAAGAGAG
Seq C2 exon
AACAAGGGTCAAAAATTAGAACCCATCCCTCATCGAAGACTAAGAATGGTAACAAATACCATTGAAGAGAATTTTCCTCTGGGGACTGTGCAGTTTTTGATGGACTTTGTGTCACCCCAGCATTACCCACCAAGAGAAATCGTGGCTCACATCATCCAGAAAATCTTGCTCAGTGGCTCTGAGACTGTGGATGTCCTAAAGGAGGCCTACATGCTTCTCATGAAAATTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085-'0-11,'0-7,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.866 A=0.836 C2=0.141
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCCATGGAGGATTTCAT
R:
TGAGAAGCATGTAGGCCTCCT
Band lengths:
356-1658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)