HsaEX0011098 @ hg38
Exon Skipping
Gene
ENSG00000170085 | SIMC1
Description
SUMO interacting motifs containing 1 [Source:HGNC Symbol;Acc:HGNC:24779]
Coordinates
chr5:176238367-176313845:+
Coord C1 exon
chr5:176238367-176238637
Coord A exon
chr5:176289654-176290955
Coord C2 exon
chr5:176313691-176313845
Length
1302 bp
Sequences
Splice sites
3' ss Seq
TTCACACAATCCTTCAACAGGAC
3' ss Score
8.38
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCTCGGGGCGGGGCCGGCGTGGCGGTGGCCCGGGTTGTAGCCGCCGCCGCTGCCGCCGCCCCGCCGCCGCCACCTCAGAAGCAGGAACCGAAGTCGTCGCCGCCGCCGCCACTGCCTGGGTCTTCGGTCGGGGCCCGCAGCCATGGAGGATTTCATCGTGATCTCGGACGACAGCGGCTCTGAGAGCTCCGGGGGCGCCCGCCCGGGCCGGTCGCGGAGGCCGCGCCGGGCCCTGTCGCGAACCTCCGGCGCGCTGCCCCGCCGGACCGTG
Seq A exon
GACTTCATTGACTTAACTAGAGAGACCAGACCAAGGACAAAAGATCGCAGTGGACTGTATGTGATTGACCTGACAAGAGCTGAGGGAGAAAATAGACCTATTGCCACTCTTGACTTAACTTTAGAACCTGTCACTCCTTCCCAGAAGGAGCCAACCAGTCTTCAGACATGTGCCAGCCTCTCTGGCAAAGCGGTGATGGAAGGGCACGTGGACAGAAGCTCTCAGCCTACAGCACGGAGAATCATTAACAGTGATCCTGTAGATTTGGACCTAGTGGAAGAAAACACCTTTGTAGGTCCCCCACCCGCTACATCCATCAGTGGAGGCTCTGTTTATCCAACAGAGCCTAATTGTAGCTCAGCCACATTCACAGGTAACCTCAGCTTCTTGGCAAGTCTACAGCTGTCTTCAGATGTTAGCTCCCTCTCCCCAACAAGCAATAATAGTAGGAGCAGCAGCAGCAGCAGCAATCAAAAAGCACCCTTGCCATGCCCACAGCAAGATGTATCTCGCCCACCACAGGCCTTGCCGTGCCCCCTGCGACCTTTGCCATGCCCACCGAGAGCCTCACCATGTCCACCACGAGCCTCCTCATGCCCACCACGAGCCTTGTCATGCCCATCACAAACCATGCAGTGCCAACTACCAGCTCTAACTCACCCACCTCAAGAAGTGCCATGCCCTCGGCAGAATATCCCAGGCCCACCTCAAGACTCTCTGGGCCTACCTCAAGATGTGCCAGGGCTGCCTCAAAGCATATTACATCCACAAGATGTGGCATACCTGCAAGACATGCCACGGTCACCAGGAGATGTGCCACAGTCACCAAGTGATGTTTCACCGTCACCAGATGCACCACAGTCACCAGGGGGCATGCCACACTTACCGGGAGATGTGTTACATTCACCTGGAGACATGCCACACTCATCAGGGGACGTGACACACTCACCTAGAGACATCCCTCACTTACCAGGAGACAGGCCTGACTTTACCCAGAATGATGTACAGAACCGTGACATGCCTATGGATATCTCAGCTCTGTCCTCTCCAAGCTGCTCTCCCAGCCCACAGTCTGAAACTCCCTTAGAGAAAGTTCCTTGGCTCTCTGTCATGGAAACCCCAGCCAGAAAAGAAATATCACTGTCAGAGCCTGCCAAACCTGGGTCTGCCCACGTACAATCACGAACACCACAAGGTGGGTTGTACAACAGACCATGCCTGCATAGACTGAAGTACTTCTTACGTCCTCCGGTTCATCACCTCTTCTTTCAGACGCTAATACCGGATAAAGACACAAGAGAG
Seq C2 exon
GGACAAACTCTGCCTGGGCGAGTCCTTTTCCTGCGTTATGTCGTTCAGACCCTAGAAGATGACTTTCAGCAGACCCTGAGGAGGCAACGGCAGCACCTGCAGCAATCCATTGCAAACATGGTGCTTTCCTGTGACAAGCAGCCCCACAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170085_MULTIEX1-4/7=C1-C2
Average complexity
C3*
Mappability confidence:
92%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.836 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGAAGCAGGAACCGAA
R:
GCTGCTTGTCACAGGAAAGCA
Band lengths:
342-1644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development