MmuEX1023600 @ mm10
Exon Skipping
Gene
ENSMUSG00000043183 | Simc1
Description
SUMO-interacting motifs containing 1 [Source:MGI Symbol;Acc:MGI:2442599]
Coordinates
chr13:54503779-54529223:+
Coord C1 exon
chr13:54503779-54504004
Coord A exon
chr13:54526414-54526672
Coord C2 exon
chr13:54529154-54529223
Length
259 bp
Sequences
Splice sites
3' ss Seq
TCAGCTTCATCCTCTTCAAGTTG
3' ss Score
4.57
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GCGACGCCTTCGCTGCAGTCGCTTCAGCAGCTGGAACCGGAGTCGGAGTCGCCGGGGCCGCTCGCCGCTCGCGCGTGGCTCCGCCGGGCCCGTAGCCATGGAGGACTTTATCGTGATCTCCGACGACAGTGGCTCCGAGAGCTCGGCCGGGACCCGCTCGGGCAGGGCGCGGAGGCTGCGCCGGGCCCTGTCTCGGACCCCCGGCGCGCTGCCCCGCCGAACCGTG
Seq A exon
TTGCTCTGCTAACCCACAATCTCGACAGTCTGAATTTAAATTAGATAAAGTTCCTTGGCTCACTATCACAGATAGCTCAGCCAGGAGAGAGAAATCACTGCCACAGCTTGCCAACCCTGGGTCTGCTCAGATACAAGGACAAATACCACAAGTTGGGGTATACAATAGACCTTGCCTGCATAGACTGAAATACTTCTTACGGCCTCCAGTACATCATCTCTTCTTCCAGACATTAATACCAGATAAAGATACACGAGAG
Seq C2 exon
GCTGCATCCAGCCAATGCCAAGACAGTGGAGTGGGACTGGAAACTGCTCACCTATGTCATGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043183_MULTIEX1-5/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.806 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000118072fB16652
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTTCGCTGCAGTC
R:
CTTCCTCCATGACATAGGTGAGC
Band lengths:
292-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types