HsaEX0011715 @ hg38
Exon Skipping
Gene
ENSG00000160325 | CACFD1
Description
calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
Coordinates
chr9:133467921-133470848:+
Coord C1 exon
chr9:133467921-133468028
Coord A exon
chr9:133468340-133468464
Coord C2 exon
chr9:133468563-133470848
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCCACCCTCTCTCCTGCAGAGC
3' ss Score
11.37
5' ss Seq
CAGGTCACA
5' ss Score
2.22
Exon sequences
Seq C1 exon
GATGGCGGTCGTTCCCATCGTCATCAGCCTGACCCTGACCACGCTGCTGGGCAACGCCATCGCCTTTGCTACGGGGGTGCTGTACGGACTCTCTGCTCTGGGCAAAAA
Seq A exon
AGCCCAGACTGAGGCTGGTTCCTTCGCAGCCCAGCATCCCAGGGAGCCTGGGCCATTCTCAGAGGGGACAAGACAGGCCTTTGCCACCCCAGCAGTTGTCTCTGGGGAAATCAGAATGCCTGCAG
Seq C2 exon
GGGCGATGCGATCTCCTATGCCAGGATCCAGCAGCAGAGGCAGCAGGCGGATGAGGAGAAGCTCGCGGAGACCCTGGAGGGGGAGCTGTGAAGGGCTGGGCGCCCCTCCCTCCCTGTCCCCTCTTCTGGCTCTGTGTGGGTCCAAGTGAGGCCTGGACTGTCCACGCTGAGGCACAGCCTGGAGAGGGGCCTTTGCACGTGTCCCTACACCTGGAGTCCTCTGCTCCTTTCTCCAGACTGGCTTAAGCCAGGAGCCACTGGCTGCTGGTGTGAGGGTCTGGGCTGCTGGACTTGAGGCAGAGCCTGCAGCAGCTGTGTGGACACTACCCAGCCCTACTCCTCTGCTGGGTGGGTCTGCAGATCTCACACCACAGACAGGGCTGCCTGTGACCTGCTGTGACCTGGGAGCAGCTTCCCCTGGAGATGCTGGTCCTGGCTTGAGGGGAGGGGCAAGTGGGACCCTGCCACCTGGGCACTGAGCAGAGGGACCTCCCCCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160325_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.384 C2=0.227
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=PD(5.9=5.4),PF102334=Cg6151-P=FE(90.0=100)
A:
PF102334=Cg6151-P=PD(0.1=0.0)
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGGACTCTCTGCTCTGG
R:
CAGAGGACTCCAGGTGTAGGG
Band lengths:
251-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development