HsaEX0011744 @ hg19
Exon Skipping
Gene
ENSG00000196642 | C9orf86
Description
chromosome 9 open reading frame 86 [Source:HGNC Symbol;Acc:24703]
Coordinates
chr9:139726717-139730297:+
Coord C1 exon
chr9:139726717-139726822
Coord A exon
chr9:139728172-139728228
Coord C2 exon
chr9:139730194-139730297
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTGGTCTTTCTCCAGAAG
3' ss Score
6.34
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
ACCTCCAGGTTCCTCCTACTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTAAAGTACCTTCATAAGTTCTTCAATATCCCATTTTTGCAGCTTCAG
Seq A exon
AAGGATGTCAGGCTTGCCCAGGAAAGGGGCTGTGCTGTCGTCCTGGTGTCAGAAGAA
Seq C2 exon
AGGGAGACGCTGTTGCGGCAGCTGGAGACGAACCAGCTGGACATGGACGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAACTACGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642-'12-21,'12-18,14-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.681
Domain overlap (PFAM):
C1:
PF0465211=DUF605=FE(10.7=100)
A:
NO
C2:
PF0465211=DUF605=FE(10.4=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCCTCCTACTTCCGCT
R:
CATGTCCAGCTGGTTCGTCTC
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)