HsaEX0011744 @ hg38
Exon Skipping
Gene
ENSG00000196642 | RABL6
Description
RAB, member RAS oncogene family-like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
Coordinates
chr9:136832262-136835845:+
Coord C1 exon
chr9:136832262-136832370
Coord A exon
chr9:136833720-136833776
Coord C2 exon
chr9:136835742-136835845
Length
57 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTGGTCTTTCTCCAGAAG
3' ss Score
6.34
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
CAGACCTCCAGGTTCCTCCTACTTCCGCTATGCTGAGTCTTCCATGAAGAACAGCTTCGGCCTAAAGTACCTTCATAAGTTCTTCAATATCCCATTTTTGCAGCTTCAG
Seq A exon
AAGGATGTCAGGCTTGCCCAGGAAAGGGGCTGTGCTGTCGTCCTGGTGTCAGAAGAA
Seq C2 exon
AGGGAGACGCTGTTGCGGCAGCTGGAGACGAACCAGCTGGACATGGACGCCACGCTGGAGGAGCTGTCGGTGCAGCAGGAGACGGAGGACCAGAACTACGGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.671
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000371663fB1244
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCCTCCTACTTCCGCT
R:
CATGTCCAGCTGGTTCGTCTC
Band lengths:
146-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development