HsaEX0011788 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136253231-136255380:+
Coord C1 exon
chr9:136253231-136253332
Coord A exon
chr9:136253541-136253626
Coord C2 exon
chr9:136255310-136255380
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCACACAACTTCCACCCAGATC
3' ss Score
5.08
5' ss Seq
CCTGTAAAT
5' ss Score
-0.64
Exon sequences
Seq C1 exon
ATCTCTTCTCTGTACCTCTGCCTGGTGATGGAGTTCAATGAGCTCAGCTTCCAGGAGGTCATTGAGGATAAGAGGAAGGCAAAGAAAATCATTGACTCTGAG
Seq A exon
ATCAAGACAGAAGGCGTTCCTAACACTAGAAGGTTCCCAGTCGGTGACCATGATTCCAGATTGTTCTGCCGGTCCCTGAAGTTCCT
Seq C2 exon
TGGATGCAGAATGTGCTGGGCCAGGTGCTGGACGCGCTGGAATACCTGCACCATTTGGACATCATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX1-3/7=2-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.2=100)
A:
NO
C2:
PF0006920=Pkinase=FE(10.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCTCTGTACCTCTGCCTG
R:
GATGATGTCCAAATGGTGCAGG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)