HsaEX0011791 @ hg19
Exon Skipping
Gene
ENSG00000198870 | C9orf96
Description
chromosome 9 open reading frame 96 [Source:HGNC Symbol;Acc:28669]
Coordinates
chr9:136259418-136260890:+
Coord C1 exon
chr9:136259418-136259536
Coord A exon
chr9:136259654-136259946
Coord C2 exon
chr9:136260727-136260890
Length
293 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTGGCTCTCTGCAGGCT
3' ss Score
10.57
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
Exon sequences
Seq C1 exon
ACCCCTTTCGTAAGTCCTGGATGGCCCCTGAAGCCCTCAACTTCTCCTTCAGCCAGAAATCAGACATCTGGTCCCTGGGCTGCATCATTCTGGACATGACCAGCTGCTCCTTCATGGAT
Seq A exon
GCTGCACAGAGCCCTCTTCTCCACCTGCGAGGGGCCTGCCCTCCTCAGAACCCCTCAGCTTGCAGCACCTGCTGGGCTCTAGCAGGATAATGACAGCAGTGGTAATATTCAGACCATCCCACGCGACCCTCGCAGCAGCCCTCCAGGTGGTGTCACTGACTCTTGATGGAGAAAAGCCAAGTTCAGGTGCCCTTGTGAGCATGAAGGCTGCACGGAGTTGCAAGCAACGGGAACCCAGTGTGGGCCTGAACACACCTGGCTGTCTCATGCACAAGCCCCAGGCTGGTGTGGAG
Seq C2 exon
GGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCAGCCTGAAGGCCGTCCTGAAGACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCCTTGATGCTCCAGATCGACCCCTCGGATCGAATAACGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX1-7/7=6-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.4=100)
A:
PF0006920=Pkinase=PD(4.1=30.0)
C2:
PF0006920=Pkinase=FE(20.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTTTCGTAAGTCCTGGA
R:
TCGTTATTCGATCCGAGGGGT
Band lengths:
279-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)