HsaEX0012361 @ hg38
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30787128-30807446:-
Coord C1 exon
chr2:30807302-30807446
Coord A exon
chr2:30806181-30806266
Coord C2 exon
chr2:30787128-30787357
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTCATTATCCCATTTTGTAGATG
3' ss Score
7.41
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
AAGCAGACACCAGCACTGCTCTTTCTCCAAGACGGCCGGCCATGCTCTCCTCCTCTGCCAGTCTCCTCCACCACTCTCTAACCTGAGAGCCTGTGGAACCTGCCCGTCTCCCCTCCTCCATCAGACACACCTGCCTAGGAAACAG
Seq A exon
ATGGAAAAAGTGAGGGACCGGTGAGTGACTTGCTGCAAAAGTTTATACCAGATGCAAATGACAGAGCTGGAGTTCTGCTGTGCCTG
Seq C2 exon
GAAAGGACCTCGGAAGTCTTCTAAGGAGAGTCATGGCGTATTACCAGGAGCCTTCAGTGGAGACCTCCATCATCAAGTTCAAAGACCAGGACTTTACCACCTTGCGGGATCACTGCCTGAGCATGGGCCGGACGTTTAAGGATGAGACATTCCCTGCAGCAGATTCTTCCATAGGCCAGAAGCTGCTCCAGGAAAAACGCCTCTCCAATGTGATATGGAAGCGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.004
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064816=Peptidase_C2=PU(10.7=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCATCAGACACACCT
R:
CTCATCCTTAAACGTCCGGCC
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development