Special

ENSG00000162949 @ hg38

Biotype
protein_coding
Gene Symbol
CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30722771-30820542:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
58
chr2:30736572-30736629
-
29.57
58.21
0
Exon Skipping
146
chr2:30753053-30753198
-
93.05
77.64
0
Exon Skipping
86
chr2:30806181-30806266
-
12.43
32.28
0
Exon Skipping
134
chr2:30778183-30778316
-
6.86
22.85
0
Exon Skipping
102
chr2:30729785-30729886
-
11.7
44.33
0
Exon Skipping
59
chr2:30738235-30738293
-
97.68
27.69
0
Exon Skipping
75
chr2:30763082-30763156
-
97.24
11.52
0
Exon Skipping
315
chr2:30737162-30737476
-
16.08
42.77
0
Intron Retention
1023
chr2:30742360-30743382
-
8.76
24.34
0
Intron Retention
3450
chr2:30738458-30741907
-
19.5
16.16
0
Intron Retention
1663
chr2:30736572-30738234
-
29.96
46.54
0
Intron Retention
7493
chr2:30723237-30730729
-
9.13
58.7
0
Intron Retention
6006
chr2:30764307-30770312
-
7.62
24.53
0
Intron Retention
975
chr2:30763157-30764131
-
16.17
43.86
0
Intron Retention
4944
chr2:30758138-30763081
-
14.8
44.33
0
Intron Retention
3681
chr2:30754365-30758045
-
11.45
30.06
0
Intron Retention
1091
chr2:30753199-30754289
-
8.98
26.83
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000043705 Capn13 1-to-1
Mouse mm9 ENSMUSG00000043705 Capn13 1-to-1
Rat rn6 ENSRNOG00000032375 Capn13 1-to-1
Cow bosTau6 ENSBTAG00000008946 CAPN13 1-to-1
Chicken galGal4 ENSGALG00000020084 CAPN13 1-to-1
Chicken galGal3 ENSGALG00000020084 CAPN13 1-to-1
Zebrafish danRer10 ENSDARG00000008553 zgc:136872 2-to-4
Zebrafish danRer10 ENSDARG00000052917 si:ch211-202f3.3 2-to-4
Zebrafish danRer10 ENSDARG00000077217 zgc:162184 2-to-4
Zebrafish danRer10 ENSDARG00000091723 si:ch211-202f3.4 2-to-4