HsaEX1006935 @ hg38
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30777567-30787357:-
Coord C1 exon
chr2:30787128-30787357
Coord A exon
chr2:30778183-30778316
Coord C2 exon
chr2:30777567-30777639
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTTCTTCATATTCTTCCCAGATG
3' ss Score
7.94
5' ss Seq
CCGGTCTGT
5' ss Score
4.78
Exon sequences
Seq C1 exon
GAAAGGACCTCGGAAGTCTTCTAAGGAGAGTCATGGCGTATTACCAGGAGCCTTCAGTGGAGACCTCCATCATCAAGTTCAAAGACCAGGACTTTACCACCTTGCGGGATCACTGCCTGAGCATGGGCCGGACGTTTAAGGATGAGACATTCCCTGCAGCAGATTCTTCCATAGGCCAGAAGCTGCTCCAGGAAAAACGCCTCTCCAATGTGATATGGAAGCGGCCACAG
Seq A exon
ATGTGGCAGCACTGGTGGAATCCTCCATAACCACTGTCTCTGGCTGGCAGGCACTATGTGTGTTAGAAGTTAAGGAAGGACCGGGCACTGAGTACCAGCTCCTCACACAAGGGGACTGCGGCCTTCCAGACCCG
Seq C2 exon
GATCTACCAGGGGGTCCTCCTCACTTCATCCTGGATGATATAAGCAGATTTGACATCCAACAAGGAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949_CASSETTE6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.7=48.5)
A:
NO
C2:
PF0064816=Peptidase_C2=FE(10.3=100)
Main Inclusion Isoform:
ENST00000295055fB11294
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTTCAGTGGAGACCTC
R:
CGCCTCCTTGTTGGATGTCAA
Band lengths:
254-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains