Special

ENSG00000162949 @ hg19

Biotype
protein_coding
Gene Symbol
CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30945637-31043408:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
146
chr2:30975919-30976064
-
91.81
77.64
0
Exon Skipping
86
chr2:31029047-31029132
-
13.92
31.93
0
Intron Retention
1023
chr2:30965226-30966248
-
8.54
24.34
0
Intron Retention
1663
chr2:30959438-30961100
-
31.55
44.15
0
Intron Retention
6006
chr2:30987173-30993178
-
7.35
24.53
0
Intron Retention
975
chr2:30986023-30986997
-
14.59
43.86
0
Intron Retention
4944
chr2:30981004-30985947
-
14.76
44.33
0
Intron Retention
3681
chr2:30977231-30980911
-
11.97
30.06
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000043705 Capn13 1-to-1
Mouse mm9 ENSMUSG00000043705 Capn13 1-to-1
Rat rn6 ENSRNOG00000032375 Capn13 1-to-1
Cow bosTau6 ENSBTAG00000008946 CAPN13 1-to-1
Chicken galGal4 ENSGALG00000020084 CAPN13 1-to-1
Chicken galGal3 ENSGALG00000020084 CAPN13 1-to-1
Zebrafish danRer10 ENSDARG00000008553 zgc:136872 2-to-2
Zebrafish danRer10 ENSDARG00000052917 si:ch211-202f3.3 2-to-2