Special

ENSGALG00000020084 @ galGal4

Biotype
protein_coding
Gene Symbol
CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7749554-7787813:+
Assembly
galGal4
Other assemblies
galGal3

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]


EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
117
chr3:7779973-7780089
+
95.18
14.59
0
Exon Skipping
69
chr3:7777172-7777240
+
96.24
16.67
0
Intron Retention
3961
chr3:7754398-7758358
+
11.29
22.82
0
Intron Retention
818
chr3:7758429-7759246
+
10.55
22.52
0
Intron Retention
1575
chr3:7761752-7763326
+
10.7
30.8
0
Intron Retention
959
chr3:7763502-7764460
+
9.46
27.47
0
Intron Retention
634
chr3:7765253-7765886
+
13.89
28.71
0
Intron Retention
838
chr3:7765962-7766799
+
31.27
55.65
0
Intron Retention
1278
chr3:7766967-7768244
+
23.39
51.32
0
Intron Retention
2261
chr3:7768391-7770651
+
16.53
33.05
0
Intron Retention
1604
chr3:7770813-7772416
+
12.28
22.36
0
Intron Retention
1334
chr3:7772454-7773787
+
19.53
38.49
0
Intron Retention
1437
chr3:7775735-7777171
+
14
31.88
0
Intron Retention
1854
chr3:7778119-7779972
+
10.56
28.5
0
Intron Retention
907
chr3:7782962-7783868
+
7.68
26.36
0
Intron Retention
799
chr3:7777241-7778039
+
18.66
53.01
0
Intron Retention
1907
chr3:7783921-7785827
+
24.72
67.52
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000162949 CAPN13 1-to-1
Human hg19 ENSG00000162949 CAPN13 1-to-1
Mouse mm10 ENSMUSG00000043705 Capn13 1-to-1
Mouse mm9 ENSMUSG00000043705 Capn13 1-to-1
Rat rn6 ENSRNOG00000032375 Capn13 1-to-1
Cow bosTau6 ENSBTAG00000008946 CAPN13 1-to-1
Zebrafish danRer10 ENSDARG00000008553 zgc:136872 2-to-4
Zebrafish danRer10 ENSDARG00000052917 si:ch211-202f3.3 2-to-4
Zebrafish danRer10 ENSDARG00000077217 zgc:162184 2-to-4
Zebrafish danRer10 ENSDARG00000091723 si:ch211-202f3.4 2-to-4
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"