GgaEX7002735 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7775667-7778118:+
Coord C1 exon
chr3:7775667-7775734
Coord A exon
chr3:7777172-7777240
Coord C2 exon
chr3:7778040-7778118
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTTCTTAACTAAATGCACAGCTC
3' ss Score
2.76
5' ss Seq
ATGGTATAT
5' ss Score
3.91
Exon sequences
Seq C1 exon
ATGAAATGACCAGCGTGGGAGGAGAGTTCAGCTTTGATTCGTGTCGAGCCATTTTAGCTCTGATGGAT
Seq A exon
CTCAATTCAAATGGACAACTCACACTGCAGGAGTTTGGGAGCCTCTGGCGAAGTGTCACCAAGTACATG
Seq C2 exon
GATCTCTTCAGGAGGGAAGACAGAAATTGTTCTGGATTTCTTGATGTATACGAGCTGAAGAGTGCGATACAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'22-22,'22-20,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PU(31.0=39.1)
A:
PF0003627=EF-hand_1=PD(62.1=78.3),PF134991=EF-hand_7=PU(3.3=8.7)
C2:
PF134991=EF-hand_7=FE(42.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATGACCAGCGTGGGAG
R:
CTGCTGTCTGTATCGCACTCT
Band lengths:
147-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]