HsaEX6012730 @ hg19
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30957315-30961159:-
Coord C1 exon
chr2:30961101-30961159
Coord A exon
chr2:30959369-30959437
Coord C2 exon
chr2:30957315-30957390
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTTAACTCCTTACCCAGCTG
3' ss Score
4.52
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GACCTCCAGGGGACATGTTCTCCTTAGATGAGTGCCGCAGCTTGGTGGCTCTGATGGAA
Seq A exon
CTGAAAGTGAATGGGCGGCTAGACCAAGAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAG
Seq C2 exon
CATGTTTTCCAGAAGGTTCAGACAAGCCCTGGAGTCCTCCTGAGCTCGGACTTGTGGAAGGCCATAGAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-'27-29,'27-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.5=100)
A:
PF138331=EF-hand_8=PD(32.7=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCCAGGGGACATGTTCT
R:
CTGTATTCTCTATGGCCTTCCACA
Band lengths:
135-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)