BtaEX6044973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69120613-69124914:+
Coord C1 exon
chr11:69120613-69120671
Coord A exon
chr11:69122586-69122654
Coord C2 exon
chr11:69124839-69124914
Length
69 bp
Sequences
Splice sites
3' ss Seq
GACTCTTAACTCCCCACCAGCTG
3' ss Score
4.69
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GACCTCCAGGGGACCCGTTCTCCTTGGATGAGTGCCGCAGCCTCGTGGCTCTGATGGAT
Seq A exon
CTGAAGGTGAACGGGCGACTTGACCAGGAGGAGTTTTCAAGGCTGTGGAGCCGTCTCGTCCACTGCCAG
Seq C2 exon
AGTGTTTTCCAGAATTCCCCAAAGAATGCTGGCGTTTTCCTCAGCTCGGATTTGTGGAAGGCCATAAGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'21-21,'21-19,23-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(33.9=100)
A:
PF138331=EF-hand_8=PD(32.1=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGTTCTCCTTGGATGAGT
R:
TGTCCCTTATGGCCTTCCACA
Band lengths:
120-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]