MmuEX6079242 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73322025-73326382:-
Coord C1 exon
chr17:73326324-73326382
Coord A exon
chr17:73324769-73324837
Coord C2 exon
chr17:73322025-73322100
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCCCTTAACACCCCCTCCAGCTG
3' ss Score
5.66
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGCCTCCAGGGGACACTTTCTCCTTGGACCAGTGCCAAAGCATCATGGCCCTGATGGAT
Seq A exon
CTGAAAGTGAATGGGCGGCTAGATCAGGAAGAGTTTGCAAGACTCCGAAGTCGCCTTATCCACTGCCAG
Seq C2 exon
CATATTTTCCAGAGCATCCAGAGACGCCCTGGAGTTCTCCTCAGCTCAGACTTATGGAAAGTCATAGAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'26-29,'26-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(33.9=100)
A:
PF138331=EF-hand_8=PD(32.1=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCAGGGGACACTTTCTC
R:
ACTTTCCATAAGTCTGAGCTGAGG
Band lengths:
120-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types