RnoEX0016683 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24593172-24596354:-
Coord C1 exon
chr6:24596254-24596354
Coord A exon
chr6:24595641-24595709
Coord C2 exon
chr6:24593172-24593247
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCTCTTAACTTGTCCTCCAGCTG
3' ss Score
7.21
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTCAGCTGGCTGTGGCCTGGAGTCACTTGAAGACACAGAAGAATCCAAATGGCCCTTGCAGCCATGTGGCCGGGCACCCAACTGAGGAGGAGGAGAAAGAG
Seq A exon
CTGAAAGTGAATGGGCGGCTGGATCGGGAGGAGTTTGCAAGACTACAGAGTCGCCTGATCCACTGCCAG
Seq C2 exon
CATGTTTTCCAGCACATCCAGAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTTATGGGAGGTCATAGAGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'25-30,'25-29,26-30
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138331=EF-hand_8=PD(26.5=78.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCCTGGAGTCACTTGAA
R:
CTGTACTCTCTATGACCTCCCA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]