HsaEX6012730 @ hg38
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr2:30722771-30741964:-
Coord C1 exon
chr2:30741908-30741964
Coord A exon
chr2:30736503-30736571
Coord C2 exon
chr2:30722771-30723236
Length
69 bp
Sequences
Splice sites
3' ss Seq
ACTCTTAACTCCTTACCCAGCTG
3' ss Score
4.52
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GGAAGCCCTTCAGAACATGGCTCCCAACAAAGCATTTTCAACAGATATGCTCAGCAG
Seq A exon
CTGAAAGTGAATGGGCGGCTAGACCAAGAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAG
Seq C2 exon
GACAAGCTCCCAGTGATCACTCAAGAATCTGGCTCTCATTCTAAGAGGCTGTGCTGCCCAGTATGGTGGTTGTGATAAATCTAAACCAGCCCTGCATGAAACAGAGTCCAAGCTGTCTCCCAACAGCCTGGGTTCGGTCCTTGGCTGGCCCAGGCCCAGTTAAGCCTGTGGCCACCAAGCAGCTCATCTGAGCACTTTGGGATGTATTCAGCCTACGTTGCCCTGGAAAAGGAAGCAGGAGATGTCTCCCTGTGGGAAAGGAGAAGAGAAGTTGTCTCTGAGTCCCCTGTCACCAGTTGGATTCATTTCTTGGAAGAGCCAGAATGAGCCACTTTGACCACCCTCGGGTGCTATGGGTGACACAAGAGCTGTCCACTGGGTGTTTGCAGAATAATTACACTATCTTATGTCTGGATCCTGATGATTTCACAGCTAAATGGCAAAAATAAAACATGTTTCCCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949_MULTIEX1-4/9=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF138331=EF-hand_8=PD(32.7=78.3)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGGCTCCCAACAAAGCA
R:
CTGTTGGGAGACAGCTTGGAC
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains