GgaEX0026095 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7778040-7782961:+
Coord C1 exon
chr3:7778040-7778118
Coord A exon
chr3:7779973-7780089
Coord C2 exon
chr3:7782906-7782961
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGCTCTCCCCCACAGGCC
3' ss Score
13.75
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GATCTCTTCAGGAGGGAAGACAGAAATTGTTCTGGATTTCTTGATGTATACGAGCTGAAGAGTGCGATACAGACAGCAG
Seq A exon
GCCTGCCCGTCAATGAGCAGATCCTGCACCTGATGGCCCTGCGCTATGGCAACGTGTACAAGAGAATGGGCTTTGCTGACTTCGTGAGCTGCATGCTGCGCCTTGAAACCATGACCT
Seq C2 exon
ATGCATTTCAGAACTTAGCCAAAGGTGGACCGCAAGTTTTGATGACGGTGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.6=100)
A:
PF134991=EF-hand_7=PD(50.8=77.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCAGGAGGGAAGACAGA
R:
TCCGTCACCGTCATCAAAACT
Band lengths:
132-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]