MmuEX6079244 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73316244-73322100:-
Coord C1 exon
chr17:73322025-73322100
Coord A exon
chr17:73318039-73318167
Coord C2 exon
chr17:73316244-73316299
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACTTATCTTCCCATCTCAGACT
3' ss Score
7.12
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CATATTTTCCAGAGCATCCAGAGACGCCCTGGAGTTCTCCTCAGCTCAGACTTATGGAAAGTCATAGAGAATACAG
Seq A exon
ACTTCCTTGTAGGAATTTTCATCAGCAGCGAGCTGCTGAGTCTCATGGCACTCAGGTACAGCGATAGCTCTGGCCGGGTCAGCTTCCCCACTCTTGTCTGCTTCCTGATACGGCTGGAAACCATGGCAA
Seq C2 exon
AGGCATTTCGCAACCTCTCCAAGGATGGCAAAGGCATCTACCTGACAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'30-34,'30-33,32-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000095208fB6985
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTCCAGAGCATCCAGAGACG
R:
CTCTGTTTCTGTCAGGTAGATGCC
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types