DreEX0086918 @ danRer10
Exon Skipping
Gene
ENSDARG00000008553 | zgc:136872
Description
zgc:136872 [Source:ZFIN;Acc:ZDB-GENE-060421-5204]
Coordinates
chr17:3083050-3091105:+
Coord C1 exon
chr17:3083050-3083128
Coord A exon
chr17:3086969-3087085
Coord C2 exon
chr17:3091050-3091105
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCGATTTGTTTGTTTTCCAGGGT
3' ss Score
8.58
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GATATTTTCTACGACATGGATGTGTCACACACTGGAAGTCTCTCTGTCAATGAACTCCGAAATGCTCTTAAAGTTGCAG
Seq A exon
GGTTTGTATTGAGTGACGGTATGCTGAATCTCATGGCTCTCCGATACGCTGACTCTAATGGGGAAATTTCTCTGGAAAACTTTATTGTGCTCGTGCTGCGCATGGACTGCATGGCCA
Seq C2 exon
AAACATTCAAGAGACTCTCTGCTGGGGGCCCAAACATGATGCTGGGAGAAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008553-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=FE(42.6=100)
A:
PF134991=EF-hand_7=PD(50.8=77.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTACGACATGGATGTGTCACA
R:
TTCATTTTCTCCCAGCATCATGT
Band lengths:
130-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]