RnoEX6027766 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24589156-24593247:-
Coord C1 exon
chr6:24593172-24593247
Coord A exon
chr6:24590942-24591070
Coord C2 exon
chr6:24589156-24589211
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACTCACCTTCCCATTCCAGACT
3' ss Score
7.75
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CATGTTTTCCAGCACATCCAGAGGAGCCAAGGAGTTCTCCGCAGCTCGGACTTATGGGAGGTCATAGAGAGTACAG
Seq A exon
ACTTCCTTTCAGGAGTCCTCCTCAGCAAGGAGCTGCTGAGTCTTATGACACTCAGGTACAGTGATAGCTCTGGCCGGCTCAGCTTTCCCAGTCTTGTCTGCTTCCTGATACGGCTGGAAACCATGTCAA
Seq C2 exon
AGGCATTCCGCAACCTCTCCAAGGATGGCAAAAGCATCTACCTGACAGAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTCCAGCACATCCAGAGG
R:
CTCCATTTCTGTCAGGTAGATGCT
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]