GgaEX0026095 @ galGal3
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
NA
Coordinates
chr3:7796263-7801191:+
Coord C1 exon
chr3:7796263-7796348
Coord A exon
chr3:7798203-7798319
Coord C2 exon
chr3:7801136-7801191
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGCTCTCCCCCACAGGCC
3' ss Score
13.75
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TTTTCAGGATCTCTTCAGGAGGGAAGACAGAAATTGTTCTGGATTTCTTGATGTATACGAGCTGAAGAGTGCGATACAGACAGCAG
Seq A exon
GCCTGCCCGTCAATGAGCAGATCCTGCACCTGATGGCCCTGCGCTATGGCAACGTGTACAAGAGAATGGGCTTTGCTGACTTCGTGAGCTGCATGCTGCGCCTTGAAACCATGACCT
Seq C2 exon
ATGCATTTCAGAACTTAGCCAAAGGTGGACCGCAAGTTTTGATGACGGTGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'23-25,'23-24,24-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(47.5=96.7)
A:
PF134991=EF-hand_7=PD(50.8=77.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGATCTCTTCAGGAGGGA
R:
TCCGTCACCGTCATCAAAACT
Band lengths:
138-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]