BtaEX6044971 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69124839-69128171:+
Coord C1 exon
chr11:69124839-69124914
Coord A exon
chr11:69126946-69127074
Coord C2 exon
chr11:69128116-69128171
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTCCCCAACTGTGTCCCAGACT
3' ss Score
4.96
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTGTTTTCCAGAATTCCCCAAAGAATGCTGGCGTTTTCCTCAGCTCGGATTTGTGGAAGGCCATAAGGGACACAG
Seq A exon
ACTTCCTCGCAGGGATCTCCATCACCAGCGAGCTGCTGGACCTCATGAAACTCCGGTACAGCGACAGCACTGGCAGGGTCAGCTTCCCCAGCCTGGTCTGCTTACTGATGCGGCTGGAAGCCATGGCAA
Seq C2 exon
AAGCTTTCCAGAACCTCTCCAAGGATGGAAAAGGACTCTACCTGACAGAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'26-25,'26-24,30-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTTTTCCAGAATTCCCCA
R:
TCCATTTCTGTCAGGTAGAGTCCT
Band lengths:
131-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]