MmuEX6079244 @ mm9
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73665584-73671440:-
Coord C1 exon
chr17:73671365-73671440
Coord A exon
chr17:73667379-73667507
Coord C2 exon
chr17:73665584-73665639
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACTTATCTTCCCATCTCAGACT
3' ss Score
7.12
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CATATTTTCCAGAGCATCCAGAGACGCCCTGGAGTTCTCCTCAGCTCAGACTTATGGAAAGTCATAGAGAATACAG
Seq A exon
ACTTCCTTGTAGGAATTTTCATCAGCAGCGAGCTGCTGAGTCTCATGGCACTCAGGTACAGCGATAGCTCTGGCCGGGTCAGCTTCCCCACTCTTGTCTGCTTCCTGATACGGCTGGAAACCATGGCAA
Seq C2 exon
AGGCATTTCGCAACCTCTCCAAGGATGGCAAAGGCATCTACCTGACAGAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTCCAGAGCATCCAGAGACG
R:
CTCTGTTTCTGTCAGGTAGATGCC
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: