HsaEX6012732 @ hg19
Exon Skipping
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:30954210-30957390:-
Coord C1 exon
chr2:30957315-30957390
Coord A exon
chr2:30955304-30955432
Coord C2 exon
chr2:30954210-30954265
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCGTTCACCTGTGGCCCCAGACT
3' ss Score
5.3
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CATGTTTTCCAGAAGGTTCAGACAAGCCCTGGAGTCCTCCTGAGCTCGGACTTGTGGAAGGCCATAGAGAATACAG
Seq A exon
ACTTCCTCAGAGGGATCTTCATCAGCCGTGAGCTGCTGCATCTGGTGACCCTCAGGTACAGCGACAGCGTCGGCAGGGTCAGCTTCCCCAGCCTGGTCTGCTTCCTGATGCGGCTTGAAGCCATGGCAA
Seq C2 exon
AGACCTTCCGCAACCTCTCTAAGGATGGAAAAGGACTCTACCTGACAGAAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-'30-32,'30-30,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTTTCCAGAAGGTTCAGACA
R:
TCCATTTCTGTCAGGTAGAGTCCT
Band lengths:
131-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)