GgaINT0079525 @ galGal4
Intron Retention
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7754149-7758428:+
Coord C1 exon
chr3:7754149-7754397
Coord A exon
chr3:7754398-7758358
Coord C2 exon
chr3:7758359-7758428
Length
3961 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGGCATTCTCTTTCTTTCAGGAG
3' ss Score
10.56
Exon sequences
Seq C1 exon
GACAGGGGAGCAATGCTCAACCTCAGCTCGGCTCCGAGGTTGCAGCAAGGCCTGCAAACAGCAGGGACAACAGGAGGCCTCCAGAACCTGAGGAATTTTAATAATCAGGACTTCGAGCACCTGCGATCCCTGTGTCTGAGCCAAGGCCTGTTGTTTGAGGATGACATCTTCCCTGCTGATACCAGCTCCATCGGTCCCAACCTGCTCCCAAAGGATAAGCTGCAGCAAATAGAGTGGAAGAGGCCAAGG
Seq A exon
GTGAGTTTCATGAGCCCAGGTGTCTTGTATTATTGCTGCTGGATGTGGGTGCTGATGCCTTCGTCCTGGGGGAAAGAGGTCTGTGCTAAGCAGGAGAACAGAGCCCAAGGGGAGCACTGGGAACGCAACACTGAAAGAAAGCATCCTTGCTGTGGGACATGTGGAAGGAAGTTGACCTACTGACAGCATCTTCTGCATGTCTAGCTTGTGGGCTGCCCTTTGCAGACCAGGGCAGCAAGGAGAGGGATGCTGTAAACACCTGAGAAAGCAGGGGGGCTTGCAAGCAACCCATGGAAGGTACCATACATTCTATGCATGCCCTGATTGCTTGGGTGGGAGCTGAACAACTCCTTTGTTGAAGCACTCTGTCTTCTCCAGGTCCTGGGGCTCACCAGCTGCCCCTTCAAGGCTGCTCCTGGTCTTGCCTCTCTTCCAAAAACCTTCCTCAGTTTAAACTGCACTTACCTAAGTAGTGGTGTGAAATCACTTGAGATTATCTTTCCTTGTCTACACACTTAACACGCGTAGATTCTGACATTCGAGTATGACGAGCTCACATGGCTTTGCCCATAGTCACAGCTCTGTATGGGTTACAGAGCCAGAAGATCTCAGTCTCTCCCTCGGTAAGAGTGGCATCCAGCTCTGTGGATTAGCATTTGTAATACTAATATTGTCATTGTGTACGTTTCTGTCTGTGAACCTCACTAGAGCTAGTGCTTCCATTTGATCTGCTTCTGGATGACTCTCAAATTCTACTGAAGATCTCTCATTTCTGTAACTTAAGCCACTGATTCGGCAGTACCTCTTTGAAAGTTCCCTGTTCAGATTTAATGGGCTATTCCCCTGGTGCTTAAATAATAATAATAATAATTCTGGAAATGTATCTGTAATAAAAATGACATTTTGGGCCTATTAGTTTCTTAGCTTCCATCTTCAGAGTCATACAGGGTTTTGTTACTTAAGTAGCAGATAGCTCTGATATAGCAGTTGAGCAGCAACACTGACTATTTTACCTTGTACACTGTTGAGAAAAATAGGCCAATTATGTTCAGAGCTTGAAGTCTTCATATCTGGGGGTAATGTGCAAAGCAGGAAGAAAACAGACTGATTTTCATACAGCAGGAGTCAGTGGTAACAGTCAGTACCAACTTGTTTCGACCTGAAAAGTGAGCTGATTTGGGATGGGAGTTCCTGGAGGGGTAGGTAGGTCGGGGGGGGGGCACCCGGACAACATTTGAAATGTCCCTTTTTCTAACTGTGCCGTAGTTGTGGTTTTCCATTTGATGGGAATTGCCCCAGTCCATGTTTTCAACACCAAGCCTTCATGGTAGAGATTTTTGCATGTGGTGCTTAAAGCATTAATTGTCTCTCAGTGAAGACTTGGGAGACACCATGCCACTGCATTTGGTATCTAAAAAGTATTGGGAAAAACAATAAAGCTTCAGACAATGCTTGTCTTATGGGGCTTGCTACTTATTTAAATCATACAAGTTTCATTATTTGATTACAGTCATTTTGCAGAAGTGCCCTCTCACATTTGACCTCTCCTCCTCTGCCCTTTGCAGATATTTCAGGGACAGAATGCTTATCCTAATTCTACACTGCTTTGGGTGATGCTTTGTTTATCGGCACTTTATTTAATTCCCAGAGATTTCCTGGAAATAGCATCAACATTAAGGAAATCTGAACACAGGATAAACAGAACCAAGCCCTTAAAAGAAAGTGTTTTGGAATTAGGATCTTTGCACACAGCTAAGCTGAGCTGCAGTTCCTGCTGCATCAGTCTTGGCCTATCTGTAGCCAGAGGGGAGAAGCAGACACCTTCTATTCAGACAATAGGGCAGGTGGTAGCTTGGAGTCAACCTAAAAACTTAGCTTTAATGGCATGGGGGAGGAATGCAGGAGCACCTATCAAATAGAAAGGAATAAAAATAGAGAAATGTACACAGTCATGTAAGCTGCCTTAAGCAAACTATGGAAATGTGTGGCTCCCTTACATCCTGTTCAGCGTTTCTCCTTTCAAAGTCTTGAGGTTCATCCAGTATTTACCTACTTTGTTCGCAGTTGCCATTGTGCTTTAGTGCTGAACCACACAAAGGAGTTGCAGGTGCAATCTGAATGGGTTTCTGCCTCCGGTGATGGCTGTTCTCCAGCAGGGCTTTCCTCTCCCACTGGTGGGCTCCCATCTGTGCAGATTTGAGCACCTCTATCCCTGTTGTGACAGAGAGCTGGGGCAGTTTTCTGAAGGCACTCGGGTATTTGTGCTGAAAAGCTGTGAATGGGAGTTGAGTTATCCTGCTGCAGAGCAGGAAATTGAGTTCTGGCGGTGCGGGCAAAACCCTTAAGATCAGCCTGTTTTTTCTCATTAACTGTTGATAAAGCCTCCAGCCAAGAAAGTCCTTTGGTCCCCAATGGAGAGCGGATATATGGATGTACACAGGAGCAGCATCAGGAGGAGCAACTGAGCTTGCTTTTCACCACTCTGTCTGACAGCACTGCAATGGGCAGACCTTTGGTCTGAGCCAGCACTGCCCATTCCACGTTCTGCCTTCCCTTGTTAGTGTGACTGGTTCATTTCTGTGCTGGCTATTTTGTGGAGGTTTCCTGTGGATTTGGGTGTGTGACATCATTGTATGCCTGGCTCGTCCTCAGCACAGAGCTAGGGAATTCCCTCAGCATGGGGAACAGCGGTAGCAGCTTTGCCTCTTAATCCAGAGCAACGCTGTGACAGGCACAGCAGTGATGCTGAATTAAGATTTGTCTGGCTGAGAGGAGAGTTTAGCTTCCAAACAACATCCATCCCTTTATTATTCTTCACTTCCACAATACTAATAAGCCAAATATATATATATATATATCTTCTTCAGAGTTAAAGTTACTGCAGCAGCTCAAGCTGGGTGTTTCTGAGGAAGGACTGCAAGCAAAGAAATCCCTAGGCAATTTTGCCCTTACACTCTACATTCCCAAGCCCTCAGCTGGCAGTCCAGTAGTAGCAATAGCTGGAAGTCTTTCTCCTCTGGATTGGGTCCATTCGTTGCCTCTAGGTGAGCTGTTTTCTCCTGTCTGCAGGGCTGTATGACTGCTGATGGCTGTGCTCCATCAATGTAGTCTTTCTTAATTTCTTATTTTCCAGTTGGAGCTGGCTCTGTAGCCTTCCTTATTGTAGATGGGTAAAAGTTCATCAGCCTTTGGTCTTAGGCTTCAGCTAATTTAGCTACTTGTGCTAAGCAGGTTCTATACAACGTTCTATTATACAGGTAGCTTACCAAGCACTTATATGGAAGAATCCAGGGGAAAATGCTACAAAGCCTCGTAATAGTTTCTCATGAAACACAGCAAACTTTCTAGAAATGTAAATCTAGTTTCTGTATTTATCATGCAATTTGAGTGCTGGTGCACTGTAAAGTCTGCATATCAGTGTGCAAAGTAACGAGGCACATAGCTATGCTTTGCAATAACAGACAGTAGTTCCTGATGCTTTATGACCACCGTATTTCCTTGGAAGAATGAGGAGTTAATTGGAGACTTCCTTTCCTCCCTTTCCTCCCTTTCCTCCCTTTCCTTCCGCTGGAAAAGGGCTCGATTTCTAAAGTGCTGCTCCCATCACAAATATAGAGTAGCCTAGAATAGAAGTATAGTTCAGTTGGAAGGGACATACAGATGTCATTAGGTCCAGCTGCCTGACCACCTCAGGGCTAATCAGAAGTTAAAGCATGTTAATGAGGACATTATCCAAATGCCTCTTGATCACTGACAGCCATGGGGACTTCACCAGCTCACTAGGAATCCAATTCCATGGAAGATGTATGGTTTGGCAGCTGGGCACAGAGCCCTCTGAAAGGCATTTGTAGCATTAGACAAACCCAAATGAAAAGCCAATAAGGGACTCAGAAAGGGGCAGGAACATGTGGCTGGCAGAGGCTGGGTGCCCTCACTTCTCTTGGCATTCTCTTTCTTTCAG
Seq C2 exon
GAGCTTCTGAGAAACCCCTGCTTGATAATGGATGGAGTTAGCAGATTTGATATTATTCAAGGAGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084:ENSGALT00000014759:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.8=38.6)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]