BtaINT0031310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69071638-69080997:+
Coord C1 exon
chr11:69071638-69071866
Coord A exon
chr11:69071867-69080918
Coord C2 exon
chr11:69080919-69080997
Length
9052 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCCCCTGCTCTTTTCTAAGGAT
3' ss Score
9.41
Exon sequences
Seq C1 exon
GAAAGATCTGATACCTCTTCTAGGAAGAATCATGGCACACAACCAGCAGTTTCCAGCCAAGACCCCCATCATCAAATTCAAGGAGCAGGACTTTTACTCCTTGCGGGATCATTGCCTAAACAGAGGGCTGCTGTTTGAGGATGAGACATTCCCTGCCGAGACTTATTCCATAGGTCTGCAGCTCCTCAAGGGAAAAAACCTCTCCAACCTAAGCTGGATGCGGCCAAAG
Seq A exon
GTGAGTGAAACTCCCCACCTGGGACATGCCCAGCTCCTGGGCCCTCTGACTGTCTCCCATGGTACTTCCCACTGAAAGGATGGGCTTGAAACCTGGTTTTCAGGGCTGGCCCAAACCAAACTGGAAGGAGACTGAAATTCATCTGATCCCCTCAGCTACAGTGTTGCATCCACAGTGGGATGGAAAGACTCTATACCAGGAAACAGGACCCCTGGGTTTTAACCCAGTTCTAACACAGCATGTCACTAGGTTACATGTCTCAGGATTCCCACATAAAAAATGGGGAAGCAAAGGTATGAGGATTGTAGTAGTAGCTGTAGGGTCTCTTCCATCTCCATAAACGAGCCCCTCTGTCAGTGTTCATCACTCTTTATTCTGTTCAGGTATCACTGTCTTTTTCTTTTTTCTTTCCTAGTTAGAATTTACTCAAAGGGAAGATAACATGTCAATCATTTGTACAATAGGATGAATTTCAACAATTGCCTTGCCTCTCTCACATGTATTTGTATTTTTAGTCTTGTAAAGGCTGATCACCTATAAAAGAGTTTTAGACATCAGTTATAAAATTAAAGAAATATTTTGTGGCAATGTTCAAACCCCCTGACTCCCCCACCCCAACAGATGACCACTAACTCCACCTTGCAGCCAAGTGAGCCCACTTGGCTTTTCTAGAACTATCTCAGTTTCAGGACATGAAGCTCCAAGGGAAATTTCTCAGTCCACTAAACATTCTTGTGCTGGCATTTTCAATGATACAAAGGACCTGGCTAAGGGCCACTTTGAGGGCACTGATGCTCAAACATCCTGTTCATGCTTCCAAAAGCCGACAGCAGAACCTAAAACAAGAGGACAGAGTATAATGTCTAGTAAGCTAATGATTATAATATCACTAGCGTTACTGAATGGGAATGAAACGCCAAGCACTCTGTGGAACACACTCAATGAAGCCAGGTTAGGTTACACAGAATAGGGGTTTTCTGATGACAGAACAAGACATAAACCCTGGAGTAACCATCTCTTGACCCCACTCCAGTACTTTTGCCTAGAAAATCCCATGGACAGAGGAGCCTGGAAGGCTGCAGTCCATGGGGTCACTAGAGTCAGACAGAACTAAGCGACTTCACTTTCACTTTTTGCTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAATGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTACCGTCTCTGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCAACCATCTCTTGTCCTAATTCAGGACTGATTTGTAGCTTTGGGGAAGGCGAGGGTGAGTGGGGATCTGATGGGGTTTAGGATGCTGCTTAGTTAAGATGGAGAAGGAAATGGCAACCCACTCCAATATTCTTGCCTAGAAAATTCTGTGGATTGAGGAGCCTGGTGGGCTACAGTCCATGGGGTCGCAAAGAGTTGGACGTGACTGAGCGACTTCGCTTTAGTTAAGATGAGGGTGCTTCAAACTTCTAGGATCCAGCTTACCAGCAAGAAGCAATAAGTCCCCAACAATGACTCCCTTCTGGACTTCATTCCTAAGGAGAACTGAGCAGAGAACTCTATTTAAAGCTTGGAAGGATTATATTTTCCCCCCTTTGTTATTTTCAGATGAGATTCTTTTAGAATGTTGTTTTTTCACAAGGTACTGAGCAATAGATGTGAGACTATATTTATAGTGTTGAGAATTTATAACATTTTTATTTAGAAAGGATTGAGTTTTTTATCTAATTCCAACAACATCTCAACTTGTGATGTCTTTTGGGGTCAAGGAGAAACTGAGGCAAACAGAAATGAAATGACTCACACAGAATCATTCCAGGAACCCATAGTAGAGGCAGCCAAGGGCCAAGTACATTTTACTCCCATTCTTCTTCTCACCCCAAAGCTTATCCATCCAAAAACTCTACCAGGGGATCATTTTTCATTCCCACATTTCTTTTAAAATGTATATGTTCATATTTCTTTGTATCCCTTATCGCAACTGGCAGCACTGAACACTTGTATTTTTCAGAGCTTTCCATACGTCTTCTCTTTCTCTGTTTTTTGTTCTTCCCAGTTTTGTGAGGGAATGGGTTCAGACAGGTGATGTGACTTGCACAATGTGACATAGTTAGGGAAAGAGCAGGATTTAAACTAAACTTTCTGACTTCACATACTACATGTGTGCATCTTCAGTTGCTGTCATGTCTGACTCTTTGCGACCCAAAGGACTGTATGCAGCCCACCAGGCTTCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGATTGCCATTTCCTTCTCCAGGGGATCTTCCCAGGGATAGAAACTGAATCTCCTGCATTGGCAGGCGGATTCTTTACCACTGAGCCAACTGGGAAGCCCCCCACATACTGCACTTTTCCTCATATTATATTTTAGGCTCCTGTTTGCTACTAATAATAACTTGTGCATCAGTAGAATCTCCTGCATTGTCTGAGTAACCAGGAATCAATCTCTGTCTATGTTCTGCCCATTTTTTCATTTTTTTAGGTGAAAAGAATGAGGATAAAAATGGTGCCAGTGCCTAACAAGATTATTTTAAGGAATAAATGAAGACAATACATAGAACATTGTCTAGCACATTGTAAGAACTTACTAAACACTAGTTATTGTTACTCTGATTAATTTGAGAGGGATGGCATCGCATAGCAGCTACAGGGGCCATCCCCTAGGATTCCTTGGGCTTTTACTGTCTAGTCATCTCAGCTTCAGTCTTCAGCTAATTTCAGCAGAGACTTTTAAGGAGAAATGTGGGTCAGAGGAAACCATCTGGGGAGCCCAGAGGAGGCTGGCAGGGAGTGTGCAGCGTGCTTTTCCTCTCACATTCTGCTGTCTATCTCTATTAGAAGGGTGCCTCCCAATCTAAAGCTTGCTCAGTGCCGACCTGACTGCATCCCCTAAACTTCAGTTATATAGCAGCTGAAGTGGCACCAAGGCTCCCTAGGCCATTTCTGCATTCTGTGTTTTCTAGACAATGGGAAAGCATCATACTCTAGGCAACCGCTAAACCAGCATGGGTATCATTCTACCTCAAGTACTCATTCAGGCTTGGTAGGTTCAACAACAGAGCAAGAGTCAGGGACATGAAACTAGGCTTGGCTTTCTACACGAAGAAGAAAAGTTGTTTCTCCTGTAGTTTATGTTCTCTCTCTCGTTTTGTCTACCTCTTCCTTCTTCTTTGGAGAAGGCAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGTTGCAGTCCATGGGGTCGCTAAGAGTCGGACATGACTGAGCAACTTCACTTTCACTCCTTCTTCTTATCTCCTCTCTCTCTAACAATTAAACCTGATCCATTTTGCTACTGTTCCTCCCATTGCTTCCTTCAGCTGGGTTTAAGGAATCAGCAACCCACTCCCCAGACTCTCCCTTCCCCCGACCAGCAGGCAGTCAGGTTCCATAAATGCCTGTGACTGTGCCCAGAGCAAAAGGCGCTGAAAGGACCCAACTCCTCATCCTCCTCAATGCTTCCTGCAACCCCAGCCTCAGGAAAGACAATGCTGGAAATTACACCTGTACTCAGAGACTCTACATGAGGTTTCCTCGAACTAAATTTGGTAGAGTCACTTTCTTCTAAAAATTTTATCTCATGAATAGTATCAAATTCCATTTATCAAGCATGTTTCTATGCTAAGTATTAATCTAAGCACCTTACACACAACATTTCATTTAGTTGCCATAACAGGCCTCTGAGGTAGATGATATTGTGTGTGTGTATGTTAGTCGCCAGTGGTGTCTGACTCTTTGCAGTCCCATGGACTGTAGCCCGCCAGGCTCTGTCCATGGGATTCTCTAGGAAAGAATGCTTGAGTGGGTAGCCATTTACTTTTCCAGGGGATCTTTCCAACCCATGGATCGAACCCAAGTCTCATGCATTGCAAGCAGATTCTTTACCATCTGAGCTACTAGGGAAGCCCAGATGATATTATCCTCATTCAATAGATCAGCACCATCCAAAAGAACTTTCTGCGAGGATGGAAATGTCCTTTCTGCAAATACAGGAGCCACTAGTCACATGTTGCTATCAAGCAACTGAAATGTGGCCAGTGTGACTGAGGTGTTGAAGATTTAATTTCATTTAAATGTAAGTAGCTAATATAGCTTGTGGCTACCATATTGGAAAGCACAGAATTGTAGATGCAGATCTTCACAGCAGAGTTGCCAATATATCAGGCTGTATATGCATGTTCAGTCATGCCTGACTCTTTGTGACTCCATGGACTGTAGCCCCCAGGCTCCTCTGTCCATGGAATTTTCCAGGCAAGAATACTGGAATAGGTTGCCATTTCCTTCTCCAGAGGATCTCCCTGATCCAGGGATTGAACCCATGTCTCTTATGTCTTTTGCACTGGCAAGCGAGTTCCTTACCAGCTGAGCTGGATTTAATTTAATTTGAATGTAAGTAGCCAATATGGCTTGTTGCTACCATATTGGAAAGCAAAGAATTATAGATACAGATCTTCACAGCAGAGTCACCAATATGTCAGAGTAAGAGATTGAAATTTCATCTTTGTCTTCATTCTTTAGTGGAAAACATGTTCATTACACAACTGAAGAAAGGGCTGTGGGCCCAAAACAGGTTCAGGGATCAGCACCCAGCCCCACTGTGGATTCTGGCCTGTGGCAAGCCCAGAATATCACTTACCCAGATGACAACATTCATCTTCCAAGTAACCAGAGCAGAGTTTCTGAAAGGACCATTTACTAGGTATGACTCACCTTGGTTTCAACATAAGTTGTCCCAGAAAGGAAGGGGTTAACAATAGGTAACAGAAGGCAACAGACAATTAGCACAGCACCAAAGAACTTTGATTCCAATAAAGCAAAGTTCTCTAGCAAAAAATAGAAAAGGGAGTGACGCTGCCACCTGGCCCTGCCTGAACTCTGGCCACTGGCTGAAAGGGGCTGTGTCTGAAGGCCAGCATGCTAAGCCTGGTGTTTCCCCATCCCAGAGCAGCAACTGTCTGGGGCAGGGCATGAGGAGCTCTTGAAAAGAACACAGGAATCACCGTCCAGAACATAGGAAGTGATGCCACACTAGAAAGACACCTCCAAGGATGTGTGCAGGGGAGTGCCTGATGTCATACCACTTCAGATATGGGTGTGGGTGTGGATGCAGAGGGGAAGAGGGAGGCAGAGAGGGGAGAGGTCGAGATCTCCTATAGGACATAACCAATAGTAACTGCACAGATATAGCCTGTGGCTTCATCTATTATGAGGAATTGGCACACGTTAGTTATGGAGGCAAGACATCCCACAGTCTGCTATCTGCAAACTGGACACCCAGGAGATCCGATGGTACAGTGCAGCCCATGTGGGAAGGCCTGAGAACCAATGGGGCTGATGATGTCATCCCCAGTCCCTGGGCAGCAGTCAGGCAGAGAAGGGGTGAATTCTCCCCTCCTCTACCTTTTGTCTGTTCAGGCCCTCCATAGATTGGATGGCGCCCATCCACACTGGGGAGGGCAATCTTCTTTACTGTGTCCCCTGATTCAGATGCTAATTTCATCTGGAAGCACTCCTTTGAAATAATGTATAACCAAATATCTAGGCACCCTGTGAGCCAGTCAAATTGACACATAAAATGAACCATCACAGCTTCCTTCTGTACGGATGATGTTGCAGAGGCCTCAAAGGGTCAATCCATGTCACAGAATCAGAAAACACTGAAGACCCTGCCTGCTGGTGTGGTCCACAGCAAAGGCACTGTGTGAGTGGAGTGTCTAATGCACAGCCTGCCTCTGTGACCTAGGATAAATCACTCAGCCTCTCTGAACCTGCTTCTTGCCCTGCTGAGCCTCGGAATCACCAGAGGAGCTATGCAGATCCTGAACTCTACCTCCACTGACCTACAGAATACAGGTTGTGGGAAGGCGACATCCAGCAGCCTGTATATCTGCAAAACTTGTGGGTGATTCTGAGTCACTCCCGGGGCGGAGGCTGCCCATCACCAGTCCTGTCACACTCCCTTGCAGACATGGTGCACCTGGCCCACGTAGTGCCAGGGCACCTGCCCAGGGCCAGAGGATTTTTATCTTCCAAGCATATTGACCTGTTTTCTCTGAGGGCCTGGTCTCAAAGCCGGCCCAGCAGACTGAAATGCTTCTGGGTATGATTTCTGTCTCCTCCTACCTTTGCTCTTTTGGGATTGCCCAGGACCCTTCTTAAGCCAGGGTGAGGAAGGAACGGGTAGCTCAGGAAAAGAGACAAAAAATGCTAGTTTTGTGCCCAACTTTGATGCACACACTTCTGGTGTTTGTCCATGAACTTGATGTTGATGACTGATTTTTGGTTTGAAATAATTGCCATTTAATCTTCAAAACATTAAAGTATCCTTCTGTTCCTACTTGGCAAAAATTTCAGTTTTTTAATTTTAATATTCTGGTAAATCAGAAAAATTTGTGCATTTATGAAATGCCTTCATGGCATTTACTGGAAAGAGAGCAATTATTTTTCTTTTGGCCTATGTAAATGTCATTTGATGTCATCAGATATCCTGATAGGAATCCATCCTGGCATCCTACATTTCTGTGGCAAACCCTACTTGATGATAGTGGGTTAGCTGTATAATTTATTGTTGATTCCCTTGCCAGGGATTTATTTCAGTATTTTTCCATAAGTGAAATCAATCTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGAGGTTGGGCATCCTGGCTGTGCTGGCTTCTTAAAATAAACAATGACAGGATTCTTTTTTTTTTCCTAACGCTGAAACTACAAGCGACACAGAAATTGTTTATTCCCTGAAAATCTGAGAGAACTCAGCAACAAAATTGTGTGTAGAAGCCTTGACAGAGATATTAGGGAGATATTCTTTAATCATTAAAAACTACTATAGCAAGGTTATTGATTTTCAGGTGATTTACCAACTTGGATCATTTTTGGCCATATTAATTTTTGTCCAACAATCTTCAGTATGTTTTAAACCGATTAGTATAGAATTTTACATCATGTTTTTATATTGTTAAAACAAGATTTCTAATTTTATTTGAAATAAGATTCTCTACCATATTAGCCAAAGATTGGGTCTAAGTAAACCTTCTCCCCCAATACAATGTATTTGCTGATCTTGCTATGTTTCTATTTTGTAATTCACCAATTGTTCTCTTTATCATTTTCTCCCACCTATATATGTGAGGCTCTTTTTTCTTTCTTTTATTTTATAATTTGACTGTGTAAATCATGTTTTTATTCTCTCTTGTTTCATAATGAATGCATTGGAGACACTAGGTTTATCCATGAGTATGGTCTTTTTAATTTTGCAAATATTACAGAAGCAGGGAATCAATATTTATTGAACAGGCCCCTTGTCTGACGCTATGCTAATATTTCACATCCTTCCTCATTTGTAAAATAATGAAGACTCCTGTTTGGCAAGTCCATCAGGAGATCACTGTGAATGAGGCATCTCATCCTCCACGAGGGTTTGGTCACAGCAGCCAGGACATCATGACTTTCTCATTTGATGCCATTTTCTTACATATGAAGAAACCAAGGCTCAGCAAAGTAAAGGAAGTTGCTCAAGGTCACCCCAGGAACAATGCAGACAGGATTCCACACCAGGTTCTGCTCTTCTGACCCTCAGCACACCCACCCCTGCTCTGCCCATCAGGGTGGTAAACCAGGAATAAATGACGAAGAAGCTGCAGCGTTCTTTATGCAGTGGTCAAGAAACCTGAGTCAAAACCCAAACGCCTTCACCTTCTTTAACTCCCTTGAGTGGAGGATCTCCAGCCAGCCTCCACTAAGATCTCAAGTTCCCTCTTCCAGTAGAAAGGGAGGGGACAACTAGAGCCACTGAAGCACCCCAAGCTGCTTTGACACTGGGAGAGTTGCTCCCTCTTGGGCCCTGTGACAGCTCTGCCCTTCCTGTTGGTATTAAGAGAGACCCCGAGTTCTTTGCAGCCAACGGTAGGGCAGAGGGTCAGCTCAGGGCCTCCACTGCAAGGACTTGGGCCTGAGGGCCCCCCTCGTGGTCATCAGAGAGGGCCAGTTGTATGCAGAGAAGATGGTGGGAGGAGGCCTGGTGCGGTGGGCTGGCTGAGTTGTTTGCAGGCACGCACACCTTTGTTTGCCCCTTGGAGGCTCCACCAGGAAACTGGAGGGCAGTTTACGAAGGGCTGACAGGTCTCACTAAGATACAGGACTCCACATGTTCATGGCTGTTGAGCAGATGAATCCTTTTCCACTTTGCAGCCCCTTTCTCTGGGAACTCTCTTGTCAATGTGAAAAGAAATGACACAGGAACAATTATACCAAATCATGCAAATCCATGCAATGGAGATCCAGGACACAGAGAGGATGCTGAGGAAATCCTGTGGGCTCCTGGTTGCAGGAAAACCTAGAAGCTGCCTGGGGTCTTCCAGAATCAGTCTGGGTGTTAGCCAGGGAGTGGGCAAAGACCTGAGTAATACACAGCCTGCATCCTGTACTGCATGTGGCTGGACTTGAACCTGGAGCTCCGAATGCCTATACGGACTTCTGAGAGATGACATTTCACAAGGAAAGTGTGATTATGCTTGTAAAATTTCCTCTAGTAAATGCATCCTTTTCTTTCTTGGCTATTTATAGACTCTTAATGAAACACTGCTGTTGGGACCAGGATGGCTGATCATTTGATGTAGGATCCTGGTCCTTATCTCCTCGTGCAGTCTGCCCATGCATTTACTGCCTATCTGGGCAGTTACACATACGGCCCTCTGACATCTGCCTCCCTGTTAGCAATAAAACCTGAAGAATGAGGGGAACTTTCCTAACTCAGATCCTAAACACCTCTTTACAAAGTAACCTGTACTCCTCAAAGATGAGGAGAGTGATGTCTTGGGTACCACACTGGGAGACAGAGGGATAAAAGATGCTCATGGCTTTCCCCTGCTCTTTTCTAAG
Seq C2 exon
GATTTATTGAAGGGTAAATCAGAGCCTCTCTTCATCCTGGAAGGTGCGAGCAGATTTGACATCCAACAAGGAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946:ENSBTAT00000044473:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.7=48.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development