HsaINT0027403 @ hg19
Intron Retention
Gene
ENSG00000162949 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:16663]
Coordinates
chr2:31000433-31010223:-
Coord C1 exon
chr2:31009994-31010223
Coord A exon
chr2:31000506-31009993
Coord C2 exon
chr2:31000433-31000505
Length
9488 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTCTCCCTCTTTCCTAAAGGAT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GAAAGGACCTCGGAAGTCTTCTAAGGAGAGTCATGGCGTATTACCAGGAGCCTTCAGTGGAGACCTCCATCATCAAGTTCAAAGACCAGGACTTTACCACCTTGCGGGATCACTGCCTGAGCATGGGCCGGACGTTTAAGGATGAGACATTCCCTGCAGCAGATTCTTCCATAGGCCAGAAGCTGCTCCAGGAAAAACGCCTCTCCAATGTGATATGGAAGCGGCCACAG
Seq A exon
GTGAGTGAGCCCCACACGAGCATACCCAGCTCCAGGGTCCTCGGAGTCGCCTGCCATGGCACCTCCAGCCAAAAGGAGGTGGAGCCAAACCAAACTGGAAGGAGAATGAAATTCACCAGGTATCTCTGCTACAGTGTTGTAGCTACTCAGCAGGATGGGAAGATGCTATAGCAGGAACCAGGAGCCCAGACTCCTGAGTTCTAACCCAGTTCTAACACTAAGTACACCACTAAATTAAAATACCTCAGTTTTTCATCCAAAAAATGGGAAACCACGGGTATGAAGATTGTAGTTGTTGCTCTTTGGAGTCTCCTCCACCCCATAATTGACCCCATCTATCACTCTGTCACCCTTTCTTCTCTTCAGGTGTCAGTATCTTTATATTCTTTTTTCCTTCCCTGTTAGAATTTGCTCAAAGGGAAGATAGCAGGTCAGTCATTTACACTATAGGATGAATTTAAATAATCACCTCTCCTCTCTGCTTTATATTCCCATTCTCGATCTTAGAGAGGCTCGACCACCTGTAAGAGAATTTTAGACATTAACTTTAAAATTAGGGAGAAATTGCAGGACAACATTCAGACCTCCCTGACTCCACAACCCCAGCAGATGGCCACTACCTCTACCTTGCAGCCAGGTGAGCCCTTCTGGTTTTTCTAGAACTATCTTAATTTTAGGGCATGACAAGTCCACGGAAAATATCTCAGCTGACTCAACATTCTGATAATCTCATCAGGACTACTGTTGATGCAAAGCACCCGGATAAGGACCACCCTAAGGACCCTTTTGCCCAAACCTCTATTCACACTTCTGTAGGCACCAGCATAACCTAGAATGAGATAAAATAATAGAATGTCTAGTAAGCTAATCATTATAATATCTGCAACCATTATTGAGCACTGATTAAATGCCAAGCACTGTCTAAACACTTCCCATAAAGTGAAGGTAGGTTACAGAGTAAAGTTATTTTCTATTGGTGACTACTAAGAGGCTATGAGGTCCTCTAAAGTATTTGTCTGGTCTGTGGATATCTAATTCAGTTCTGCACATGGGAAGGAGAACTGAAGACATCAGGCTCTGGGAGGCGACACACCTCTTGCCCTACGTTGGGGCAGATTTGAAGCTTTGGTGAAGGGAAGGGTTAGGGATCAGGTAGGGTTTGGGATGCTGCTTAGAGAAAAGTGGGGTGTTTCAGCATTCTAGGGTCCTCTTATCAGCCATTGGCAGTAAGTCCTCAACAATGATTCTCTTCTTCTAGCCTTTACCTCCTAAGGAGAGCTGAAGCAGAGAATTCTATTTAAAGAAGTTCCAAAAGGTCATTTTTTTCCCTTTGCTATTTTCAGAGGCTGAGATTATTTCAGAAAGTGGTGGGATTTTTTTCTCACAAGGTGCTGAGCAATAGATGTAAGACCATATTTATAGTGTTGAAGAATTTATAACACTTCTCTTTAGAAAGGATTGAGAGATTCTAATTATCTGAATCTCACAACAACTCAACTTGTGATGTCTTTTGGGGGCAAGGAGAAACTGAGGCCAACAGAAGTGAAATTACTTATAAAGAATAATGCCAGGAACCCAAAATAGAGGCAGCCAGGGGCCGAATCTGCTTTTCCCATTACTACTCTCCTCATCCAAAAGCTTACCTGAGCTCTACTGGGGGGACTGGGGACAGGGGTATTTTTCATTCTGGCACTTCTTTTTAGATGTCATATTTCTTTGTCTTTCTTATCACAGTTGACAAGACTTACCTTTGTGTAGTACTTTCCAGAGCTTTCCATGTGTCTTCTCATACTTTATCTGCTTTGTTTTCTCCTAACTTTATAGAAAACTGATGTTCAGACAGGTAATATGATATGCCAAGGTGACATGATTAGAGAGGGAAGGATCCAGAATTTAAATGAAGATTCTTTCCACCTGCTGCACTTTCCCCCCACTGACTTAAGTGCCTAGCAGGGACTCTGCTGGAATTTGGATGAACAAGTACATGAGTGAATGGATGAATGAAGGACCCTATCTACATGTGCCTGATGCATGTTTCAAGTTCACACGTGCAAGAAAGAAACTCTGAGTTGACGTATTTTCCAAGTAGGACAGTAAAGGAAAAAGCCAATGTACTCACCCCTTCGACACTGTGATGTCCTTGACCCACAGTGTACAGCTGTGACTGCAGAGAGCACTGGAAGAGGAGCCACACCAGCCTGGCCCAATCCTAGTAGTAATGGCCACACCCACAGAGTGTTGACCACATGGCAGGCCTGGCTTTAGGAGCTTTGACTCATCAATCTTCACAGTAACTCTATGATAAGGTACTGTTGTGAGCCTCATTTTGCAGCTGAGAAGCAGAATCAGAGAGTAGGGGGACCTCTGCCCAAAGTCATATAGTTAGATGATACTAGAGCTGGAATTTGAACCCAGGAGTCTGGTTCCAAGACCTGAGCTCCTAACACCATGTTACATGACCCTTGTAAGGCCTCATCATAAGCTTATGTCCTATTCTGGGCTCCTGCCTGTCACTAGTAATGTTTTTTGCACTAGTAGAATCTTCTACCTCATGTGAGTAAAACAGGAATCAATCCCTCTCTAAAGTTGATCTATGTTCTGCCCTTTTTTCCCTTTTTAGGGATAAAAATGGCACCTGTACCACATATGATTACTTTAAGTACTAAATGAGTACAATACTTAGAATAGTGTCTAGCACAGTCTAAACACTAAGTAAACACTAGTTTTTGTTACTGTGATTAATTTGGGAAAAGTCATAAGGTAGCAGCCTCAGGGCCTATTCCCTGGGATTCTTGGGTTTTCACAGTCCAGCCATCTCAGCTTCAGTCCTTGGCCAGTTTAAGAAAACTCTTTCAGGGAAAAATGTGGGTCAGGGGCTGAAAGAAGGTTGGCAGGGAGTGTAGAAAATGCCTTTCTTCTCATGTTCTGCTTTTTTTTTTCTTTTTTTTGAGATGGAGTCTTGTTCTGTTGCCCAGGCTAGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCCGGGATTACAGGCATGAGCCACCATGCCTGGCTAATTTTTGTACTTTAGTAGAGATGGGGTTTTACCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGAGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGACACCACACCCAGCCTCATGTTCTGCTTTCTATCACTATTTTTAGAAAGTTGACTGCCAAGCTATAGCTTGCTGAGTGCCTGTCCAGAGGTCTGACCAGTGGCCCTTAAACTTCAACTATATAATGGCTGAGGTAGCACCAAGGTGTTTTAGGCCATCTCCACATTCTAAGTTTTTCCTGACAATGAGAAAGCTCCTCCTGTAGGCAACTGGTAAACCACAAGGGACATCATTCTGTTTTGAGTATTCATCCCAGCTTGGCAGGTTCAACACTAGCCCAGAAGTCAGGGGCATGAGAACCAGGCTTAGCTTTCTATGCCTGGTGCAGAAAAGTTTTGTGTCATATATCTTTCCTTCTTTCTCCTCCCTGCCATCTTACCTACCCTTTCCTTCCTCTGGCTCTTATCCTTCCTTCCTCTAACAATTAATCCAATAATCTAAACCATTTTGCTGCTGAAACTTTTTCTGAAGTAGAAGGAAGCCCCGTTCACATCCTGCTTTATTCTGTTCCCAAGCCCTCCCCCTCCCCCAGCCAGGCTCCGCAGTAGCCCATGATGGTGCCCTGTGCAAATGGCACTGAGAGGACCCGACTCCTCATCAGCCTCAATGCTTCCTACAACCCTGGTCTCAGCAAGGGACAGTGCTAAAGATTATACTTACATGTGAGGTATCTATGTGATATTTCCCTGAGCTAAATTTAGTACTTAGAGTGGACCCCTTTTAGGAGAATTTTTATTTCATGGATAGTTTATCAAGCATGCACACGAGTGAAGTATTATGCTAAGCACTTTACATGCAATATTTCATTTAACTACCCTCACAGTCCTGTGAGGTAGATAATACTATCATCCTCATTAAATAGATCAGCACCATCCAATAGAACATTCTGTGATGATGGAAATGTTCTTCTCGCACTGTTCAATACAGTAGCCACTAGTCCCGTGTGGCTATTGAGCACTTGAAATGTGACTGATGCAACTGAGGGATTAAAGGTTTAACTTTTATTGAATTTAAATTAATTTAAATGTAAGTATCCACATATGGCTTGTGGCTACCATATTGGACAGTACACGATGGTAGACAGTAGAGCTTCACAACAATCACCAGTGTTGTCAGATAAACTGAAATTTCATCTTTGTACCCATTTTATAGTAAAAGACGTTTTACTTCTCAACTGAAAAATGGGCTGTGTGCCCCAAGCACGTTGCTTAACAGGTGTTCGAAGCTCAGCACAGCCCCGTTGTGGCTTCCCGCCTGTGGCCATCCTAGAGGGAGGCACTGCCTATCCCAGTGACATCTTCCTTCCACACAGCCAGAGCAGTTTCTGAAAGGATCATTCACTAGAAACGACTCACCTTGCGACCAAAACGTGCTCTTCAGGAAAGGAAGAGGTTAACAAGGTAAAGTTGTAAGTGCAGGTTAGGTTATGAAAATGTTCCATAAGGCAATAGGTAACAAAAAATGGCAGAAAGTGACCCTGCAAACAGCCAAGTGTCATTCAGCCAGAGAACTTTGATGCCAATAAATCTAAGTCCTCTAGCAAAAATAGAAAAGGGAGTGACGCTGACACCTGTCCCAGACTGAACTCTGGCCACCATGTGAAAAGGCCGAATACTAAGATGCTAAACACAGGGCTCTCTTATCCAAGAGCGGCATGCCGTGTGAGGATGTGGAAGTCTTTAGAGAGAATGCAGAAATATGAAGAGTGCTGTCACATGGAAGACATTATTTCTTGGCATATTTCTCCGTCTACCTCTGGAGACGATTAGGGTAGAGCAGCTGGCTTGAGATCACATCAGAGAGCGTATTTTCTAAGATGCCAGGAGCCCTTGCATTACAAGAGCTCTGACATACCTAATATAACACAGATTACCCCCCAGCTTTGCCTGGAGAAAGGTCTCCACAATCCAGAATTAAGTTCCTAAGATTACTTAGCTTGACTATTGCTGTTGGCTTCTGTATTACTCAGGGTTCTCCAGAGAAAAAGAATCATTAATATATACCCTGTTGACATATTTATTGCTAGTAAATATATCAATATATCTTATATAAATATATCCTAGTATATATCTCATTAACATATTGATGTATATCCTAATAGATATCCTATTGATATATTTATGATGAGAGATTTACTAGGAGGGATTGGCTCACATGCTTATAGAGGATGAGAAGTCCCACAATATGCCACCTGCAATCTGGAGACCCAGGAAAGCCAGTGATGTAGTTAAATCTGAGTGGGAGGCCAGAGAACCAGAGAATGGATGATGTAATTCCCTGTCCAAGGACAGGAAAAGACCAGTGTCTCAGCTCAAGGAGTCAGGCAGAGAAAGGGCAAATTTTCCGTTTATCTTTTTTTCTGTTTAGGCCCTGAATAGACTGGATGGTGCCCACCCACCCTGGGAAGGGAATCTGCTTTGCTAAATCCCCCAACTCAAATGTTAAAGTCATGTGGAAGCACCCTCATGGACATGCCCAGAAGTAATGTTTAGCCAAGTATCTGGGCGCTCCGTGATGCAGTTAGGATGGTATATAAAATTAACCCTCCCAACTTCCTTCTGCACTAATAATGTTTCAGAGCCCTCAAAGGCCAAGTCCATCTCACAGGATCTGAAAACATAAAGTTGAGAAGATGCTGCCTGCTGGTGTGGTCAGAGTGAAGAACAAGACACTATGGAGGCAGACACCTGATTCAGAGCCTGTTTCTTGTGTGACCTGGAACAAATCGGTCAACTTCTCTGAAGCTGCTCCTTGGCCCTGGCTGGGTCTCAGAATCCCCTGAGAAGCTATGTGAATCTTGAACGCTATCTCTGAATGACCTGTGAAATCAAAGTAGTGGGAAGTGGGACACAGCAGTCTCCCTGTCTGTGAAGCTGCTGGGTGATTCACAGTCGGCTGGAGACTGCCCATTGCTGGCAGTTCAGCCTGAATCTAATCCAGGTTCTCATCACACTGGCTTCACTGCCCTCATGTGCCTGACCCATCTGGTAACAGGTGGCCTTCCCAGAGTCAGCACATTCACATTTTCCCAGCCATCTTTACCTGTTTCCTTAATGGGCCTCATCTCAGGAAGTCAGCCTGGCAGACTAAAACGCTCCTGGGTATCATTTCCATCCCTTCCTACCATCTCTCTTTTTCGATTATTGGTCACAGCTCTAAAGTCCAGAGTCCGGAAGGAACAAGCAGCTTAGAGGACAGGAGACATAGAAGCTGCTTTTGTGCCCACCTTTGATGAAAATGACTCCTATGTTTTCCCATAAACTTGAAGTTGACTATTGATTTGTGGTTTGAAATCATCACCATTGAATTTTCATCACATTAAAATATCTTTTTGTTCCTAATTAGCTAAAATTTTTGTTTTTAACTTTTATTGTTCTAGTAAATCATGAAAAGTTGTTGTATGTTTATCAAATGCCTTCATAGAATTTATTGAAAGGATACAAATTTTTCTCCCTTTGGCCCATGTAAGTGCTACTTCATATTATTAGATGTCTGATGTGAAACTATCCTTGCATTCTGCATTTCTACAGCAAATACTATACGATGATAACAAATTATCCAAAATAAGTCTGGTATGTCTGTGTGTTTTCTCTCAGGTTGGGCATCAAGGCTATGCTGGCTTCTTAAATGGTGGCAGGATTCTTTTTTAATTTTTATTTTTACACTGAAACTGTCAATGACACTGGAATTGTCTATTCTCTGAAAGTTTGAGGGAACTCAGAGGAAAAACTGCATGTACCTGTAAGCCTTTACAGCGCATGCGGGTGATACTCTTTGGTAACTTTAAAATACTATTCCAAGGCTGTTAGTCTTTTCAGCTTATTTACTAACATGAGTCAATGTTAGCCAAGTTAATTTTTGTCAAAAAATCATCAGATTTTTTAATTGATTGGCATAGAATTCTACATCATGATTTTATATTTCTAAAATGCAATTTTTAATTCTACTTTTATTTGGGTTTCTCTACCATATTTGCCAAAGGTTGGGTCTATGTAACCCTCCCTCAAATATTAGGTTGGTGCAAAAGTAATTGTGGTTTTTGCCATTGAAAGTAATGGCAAAAACCATTATTGGCCATTACTTTCAATGGCAAATAATAGAACAATTTATTTATTAATCTTGCTGTTTTTCTGGTATATAATTCACTAATTGTTCTTTTCAGTTCTTCCTCCTATTTTTGAGGCTCTTTTTGTCTTTTTCTTTCTAAGATCTATGAATTGACTGCTAAATTCATGTTTTTATTCTATCTTGTTTAATAATGAATGCATCTGAGGCTATGGGTTTGTCTGAGTATAGCCTTTTTAATTTTGCAAATATTTCAAAAGAGGGGGATCAATATTTGTTGAACATGTACTATGTCAGACACTGCGCTAAGTATTTCACATCCTTCCTCATTTGTAAATGTAAGGACTGGTCCAGCTTTACAAGGCTGTTGGGAGCCTACCAGAGAGAACCCAAGGTACCCGCCCTCAGCAAGGGTTTGATGAATGACAGCCATTGCCTTGATTGCATCGTCATTAGATTCTCTCAACTGTCTTTACATTTTGTATTATTGTTCCATTTTACACATGAGGAAACTGAGGCACAGCAAAGTAACGGGAATTGTTCAAGGTCTCAAGGTCACCCAGGGAGAAATATTAGAGTAGGATTGCACAACAGGTCTGTCTGAATGGGCTTTCCAAGCACACCTTCTCCTGCCCTGGGGATCCCTGGAGGGGAGCTAGCAGGACCACAGTGAAGAAGAGCTGTGGCCAAGGTCAAGAAAATGGAGCAAAGCCATTTTTGTTCCTGGTCTGAAAATGCCACAGCCTCCATCTCTTCTTTACTTCTCACGAGTGGAGGATCTTTGACAGCAGGCCTCCTTTGAGACCCTAAGTCCCCTTTTCCAGTAGAGAGAGGAGACAAGTAAAGGCTACTGAAATGCCCTACACCATTTTAAAACTGGCTCTACTTGGAGCTCTGCATGCAGCCGAAGGCCCTCCGGATGTCCTTCCCTCTTTCTTGCATTGGAGGAAATGCCAAAGTTCTGCCCACGATGGCTCTGGCAGAGGGTCGGACCTGGTGCCACCCCAGGGTCCCCCTCACCCGGGAGGGCCTGGGCCTGAGAGTTCCCCTCCCGGCATGTGACGGGGTCAGTTAGTTGTAGAGAAAGCAGCGGGAGGAGTTTGGTAAAATCATCCCCGCAGCCAGGACCCTGTGTTTGCAGGCGGGCACACCTTCGTTTTCCCCTTAGTGTGCATCTCTTCCAGGAAACCTGGGCAGTTTATGAAGAGCTGGCAGGTTCTACAAGGCACATGACTCTGTACATGAATGGCTACTGAGCAAATGAATCCAATTCCAGTTTGCGGGCCTGCTCTCTGCAGACTTATTGGTCAATGTGAAAAGAAATGATATAAGGACCAATTACCAAATTATGCAAATCCAGGAAGAGCTGCACAGAGAGGAGGCCGAGGTCATCCTGGCCAAGTCTAGAGGGCTGGCTGGTGCTGGGGCAGAAGCCAGACCTGTGGCCTGGTGTTCTCCCAAAGTGCCTGGGGATCCCCTTTAGGAACTCTCACAATTTTGGTGCCTGCTGACAGTTCTTCATATTCTTCCCAGATGTGGCAGCACTGGTGGAATCCTCCATAACCACTGTCTCTGGCTGGCAGGCACTATGTGTGTTAGAAGTTAAGGAAGGACCGGGCACTGAGTACCAGCTCCTCACACAAGGGGACTGCGGCCTTCCAGACCCGGTCTGTGAGTTACCCAGGGAGTGGGCAAAGAGCTGAGTCATGTGTACCTTGTATCCCTTACAGCACACGGCTAGACTTAAACCTGTAGTCCAAAATACCTATGCTAATTTCTGAGATATACCATTTCACAACAAAAGCTTTATTATGAAAGTTATAGTACTTTATTATGTTTATAAACCTCTCCTCTAATAAATGTATTCTATTCATTTTTGATGGTTTATTTACAACCTCTTAATAAAACACTGCCTTGTCGAGATGGAATGGCTATTTGATCCAAGGACTCCAAGTCCTTATTTATGTTATCTCTCCATGTAGTATGCTAATGCATTTATGGCCTGTCTTGTCAGTTACATTTACACTCCGTGACACCTGCTGCCTTCCTGGTAGCAATAAAGGCTGAAGAACGTGGTGAACTTTCCTAACTCGGATTTTAAGCACCTATTTAAGAATTAACCTCGACCCTTGAAAGACAAAGTGAATGATGTCGCTTTGGGATACAAAGGAATAAACGATGTTCATAGCTTTTCTCCCTCTTTCCTAAAG
Seq C2 exon
GATCTACCAGGGGGTCCTCCTCACTTCATCCTGGATGATATAAGCAGATTTGACATCCAACAAGGAGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162949-CAPN13:NM_144575:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(10.7=48.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)